Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1370 232 8e-56 seq1193 132 6e-26 seq624 118 1e-21 >seq1370 Length=7093 Score = 232 bits (256), Expect = 8e-56 Identities = 487/719 (68%), Gaps = 8/719 (1%) Strand=Plus/Minus Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 |||||| || || | ||||| ||| | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || | || ||||| | || ||| |||| ||| |||||||| || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 || ||||||| ||| | || | ||||| ||||||||||| || || || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 |||||||| | || || || ||||| || || | ||||| || | |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 63533 TCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 ||||| || | || | || || | ||||| || || ||||||||||| | |||||| Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 |||||| | ||| | | ||| ||| || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 63652 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63709 || ||||| |||||||| ||||| ||||| || || ||||| |||| ||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 63710 TCCTTATATTTGTTAACTACA-TCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCC 63768 ||| || ||| | | || |||||||| | | || || |||||| ||||||| Sbjct 5394 TCCGAATGTTTCACGA-TGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTGTT 5336 Query 63769 ATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 63828 || || ||||||| || || |||||||| | ||| || || |||| ||||| Sbjct 5335 GTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTTGT 5276 Query 63829 TTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 63887 ||| ||||| | || || | ||| || | ||| || || || ||||| || || |||| Sbjct 5275 TTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGTT 5217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 62738 ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795 ||||| |||||||| || |||||||||||||| || ||||||| | | || |||| Sbjct 6696 ATGTTGGCAATGCAAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATT 6637 Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855 | || || ||||| | ||| || ||||||||||| || | || || || || | Sbjct 6636 CAACAATTTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATT 6577 Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913 | || || |||||||| ||||| ||| |||| |||||||| ||| | ||||| || Sbjct 6576 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 6519 >seq1193 Length=8092 Score = 132 bits (146), Expect = 6e-26 Identities = 330/496 (67%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||| |||| ||||||| ||||| | ||| || || || | ||||| ||||| || Sbjct 6017 CTTATCCACAGTGAATTTAATGGCATCGGCAGCAGGACGCGACCTCAGATAATACATACC 6076 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 || || || || | ||| |||||||| ||||| || || ||||||| || | | Sbjct 6077 TGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTTGGCGTAGTT--G 6134 Query 61960 ATCT--GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 |||| || | ||||||||||| || || |||||| || || || || | ||| ||| Sbjct 6135 ATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCA 6194 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT--AA 62075 || | | ||||| |||||||| |||||||| | |||||| || | | |||| | Sbjct 6195 GCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGA-TGGCTTTGAG 6253 Query 62076 TATCTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133 | | ||| | | || || | || || || || | | ||||| | ||||| Sbjct 6254 TTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTT 6313 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 || |||||||| | | |||||| | | | | || ||||| |||| || | Sbjct 6314 CATGCTGTCATTCCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAAT 6373 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 || ||||| ||||| | || | || || || || ||| |||||||| || | || Sbjct 6374 CTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGC 6433 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 |||||| || |||| |||||| | || || || || ||||| || || || | ||||| Sbjct 6434 CTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACT 6493 Query 62314 ATTTCTAAGACCGTAT 62329 || | || ||| ||| Sbjct 6494 GTTACGAACACCATAT 6509 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 62738 ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795 ||||| |||||||| || |||| ||||||||| || ||||||| | | || |||| Sbjct 7124 ATGTTGGCAATGCAAGCGAGGCCAAATTACAAACAGCCACCTCATCCGGAGACGAGTATT 7183 Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855 | ||||| ||||| | ||| || || ||||||||||| | || || || || | Sbjct 7184 CAACAATCTCTGTGCATAAATTGCTGCATTTGATGGTTCCAAGGTTCTGCTGGTTGGATT 7243 Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913 | || || |||||||| ||||| ||| |||| |||||||| ||| | ||||| || Sbjct 7244 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 7301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 63293 GTACCATTGGTCCCTGAGATATA 63315 |||||| || || | ||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 >seq624 Length=13322 Score = 118 bits (130), Expect = 1e-21 Identities = 207/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 32913 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 32972 || || || || || ||||||||||||||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| || || || |||||||| | | ||| ||| ||| || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 ||||| || | | ||| ||||| || || || ||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 33093 TGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTTA 33149 | ||||| || ||| || || | | | | ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209 || | || ||||| || | ||||| || || || ||||| ||||| ||||| |||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 33210 A 33210 | Sbjct 8375 A 8375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633589562496800