Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3174 98.7 9e-16 seq274 91.5 1e-13 >seq3174 Length=2562 Score = 98.7 bits (108), Expect = 9e-16 Identities = 126/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||||||||| || ||||| |||| || || ||||||| | || || ||||| Sbjct 1672 ACAATGCAAATATTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAGTCT 1731 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||| ||||| || || || | || || | ||| ||||| ||||| || |||||| Sbjct 1732 TCTGATACTATTGA--CAATGTCAAGGCCAAGATTCA-AGACAAGGAAGGAATCCCACCT 1788 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| ||||| | || ||||| || || ||| | || || | |||||| Sbjct 1789 GACCAGCAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGACGGCCGCACT 1839 >seq274 Length=20666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || ||||| | ||||| | ||||| ||||| || Sbjct 18986 ATGCAAATCTTTGTCAAGACCCTTACGGGTAAGACAATCACCTTGGAAGTCGAGTCATCC 19045 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || ||||| || || || |||||||| Sbjct 19046 GACACCATTGATAATGTCAAGGCCAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCAG 19105 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || | || |||| || ||| | ||||||||| Sbjct 19106 CAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTTCGGATTACAAT 19165 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 19166 ATCCAGAAAGAGTCTACTCTTCA 19188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433299703410770