Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq928 136 8e-27 seq1440 98.7 2e-15 seq296 87.8 4e-12 seq1958 86.0 1e-11 seq800 86.0 1e-11 seq451 86.0 1e-11 >seq928 Length=10049 Score = 136 bits (150), Expect = 8e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 ||||||| |||||||||||| || | ||||| || || || ||||||||||| || || | Sbjct 1628 TGGGTCTTGACCCCGAGTTTTCATCGCACTCGCGTATGCGAGGTCTTTCTGGTGGTCAAA 1569 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 ||||||| |||| | || || | ||||| | || |||||| || ||||||| || | Sbjct 1568 AGGTCAAGGTTGTTCTTGGCGCTTGTATGTGGAACCAGCCTCACATGCTCGTTCTTGATG 1509 Query 280798 AGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACAT 280857 |||||||||||||||| || || || || || ||||| || ||| | | | Sbjct 1508 AGCCTACCAACTATCTTGATCGTGACTCTCTTGGTGCTCTTGCTGGTGCCATTACCGATT 1449 Query 280858 TTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAGAATT 280897 |||| ||||| ||| | | |||||||||| ||||||| Sbjct 1448 TTGGAGGCGGTGTCATTATTATTTCTCACAATTCAGAATT 1409 >seq1440 Length=6742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 156/218 (72%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 ||||| | ||| ||||||||||||| ||||| || || || ||| | ||||| || || Sbjct 1697 TCACGAGTGGGTATCATTGGACCCAACGGTGCTGGCAAATCGACCATGATCAAGGTGCTC 1638 Query 280221 ACTGGCGAGACCCAGGCCACTG--AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGG 280278 ||||| ||| ||| || | | || || ||| |||||||| ||||| |||| | | Sbjct 1637 ACTGGAGAG-GCCATTCCTCAGCTTGGAGT-CGTGTGGAAGCACCCCAATCTGCGTGTAG 1580 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAAC--CACCTGGACATGACTCCTAA 280336 ||||| || ||||| || |||||| |||| ||||| || | || | ||| ||||| Sbjct 1579 GCTACGTTGCACAGCATGCATTCCAC--CATCTAGAACAGCATTTAGAAAAGACCCCTAA 1522 Query 280337 CCAATACATTCAGTGGCGCTATGCAAGTGGGCAGGATC 280374 || || || || ||||| || | |||| || |||| Sbjct 1521 TCAGTATATCCAATGGCGTTACCAAGGTGGTCAAGATC 1484 Score = 95.1 bits (104), Expect = 2e-14 Identities = 191/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCG 279762 |||| ||||||||||||||||||||||||| || |||| ||||| || || | Sbjct 2155 CTCTCTCGGGTGGTTGGAAGATGAAGCTGGAACTGGCTCGTGCCATGCTCACCAAAGCTG 2096 Query 279763 ATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAG 279822 | | || || |||||||| || || || || |||| ||||||| || ||||| | Sbjct 2095 ACATTCTTCTTCTTGATGAACCTACGAATCATCTGGATGTTGCCAACGTGGCGTGGCTGG 2036 Query 279823 TGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCT 279882 | || || || | ||| | || | | | ||| ||| || |||||||| || Sbjct 2035 TAGAGTATCTCGTTAGCCAAAAGGAGGTGACCTGCATCACTGTTTCGCACGACTCGACCT 1976 Query 279883 TCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGC 279942 | | || || ||| || ||||||||||||||||| || |||||| || | Sbjct 1975 TTTTGGACAATGTCTGCACTCATATCATTCACTATGAGCAGAA---GAAGCTGGCCTATT 1919 Query 279943 ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGC 279985 ||| || |||||||| || || | |||||||| ||||| Sbjct 1918 ACAAGGGAAACCTGTCCAAGTTTGTTGAGAAGCGCCCAGAGGC 1876 >seq296 Length=20057 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 217886 CTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGC 217945 |||| ||| | || || |||||||| | | |||| | || || || || || ||||| | Sbjct 13372 CTGGCCTTTCAGTCGTTGGTCGTGACAACTTTGGTGTGTTTCCTCTTCGCGGAAAGCTTC 13313 Query 217946 TCAACGTGCGCGATGCCTCGGTTTCAAGCATTGCTGCAAATGCAGAGATTGCCGCCATCA 218005 | || || || || || | ||| ||| | | |||||||||||| |||||||| Sbjct 13312 TTAATGTCCGTGAGGCTACACATTCTCAGATTACAGGCAATGCAGAGATTAACGCCATCA 13253 Query 218006 AGCAAATCCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATGCGTCATCTCTGCGTTATG 218065 ||||||| ||||| || || |||||| || | ||||| || || ||||| |||| Sbjct 13252 AGCAAATTCTGGGACTGCAACATGGAAAAGTCTATGATGATGCTTCGTCACTGCGATATG 13193 Query 218066 GCTCTGTCATGCTTATGACTGAT 218088 | | | ||| | ||||| ||| Sbjct 13192 GACATTTAATGATCATGACGGAT 13170 >seq1958 Length=4738 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 931 GCCCGGCTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGTGGGTTCGACC 990 Query 142564 CCCACATCGGGCAGA 142578 ||||| |||||| || Sbjct 991 CCCACGTCGGGCTGA 1005 >seq800 Length=11041 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 11041 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGTGGGTTCG 10982 Query 142561 AGCCCCACATCGGGC 142575 | |||||| |||||| Sbjct 10981 ACCCCCACGTCGGGC 10967 >seq451 Length=16184 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 11573 GCCCGGCTAGCTCAATCGGTAGAGCGTAAGACTCTTAATCTTAAGGTTGTGGGTTCGACC 11514 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 11513 CCCACGTCGGGC 11502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027766239646078