Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq274 161 2e-34 seq3174 125 1e-23 seq1440 98.7 2e-15 seq928 89.7 9e-13 >seq274 Length=20666 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| |||||||| | || | ||| || || |||||||| ||||| || ||||| || Sbjct 19212 CCTCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAA 19153 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | | || ||||| || || Sbjct 19152 AGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGG 19093 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || ||||| ||||| |||||||| || |||||||| | ||| || ||| Sbjct 19092 ATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACT 19033 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| ||||||||||| || || ||||| Sbjct 19032 TCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 >seq3174 Length=2562 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||||| || || || ||||| | || ||||| ||||| || |||||||||||||||||| Sbjct 1820 TGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGAATC 1761 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || |||||||| || || || || | || ||||| || | ||||||||| || || Sbjct 1760 TTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCAAGGGTGATGGTCTTGCCA 1701 Query 68436 GTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||||||||| |||||| Sbjct 1700 GTCAGGGTCTTGACGAATATTTGCATT 1674 >seq1440 Length=6742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| ||||| ||||| || |||||| | || | || | || | ||||||||| Sbjct 1501 TAACGCCATTGGATATACTGATTAGGGGTCTTTTCTAAATGCTGTTCTAGATGGTGGAAT 1560 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAG-- 225095 |||||||| || ||||| | | |||| ||||| ||||||||||| || | || || Sbjct 1561 GCATGCTGTGCAACGTAGCCTACACGCAGATTGGGGTGCTTCCACAC-GA-CTCCAAGCT 1618 Query 225096 TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGC 225155 || ||||| || ||||| |||||||| | || | ||||| ||||| ||||| | Sbjct 1619 GAGGAATGGCCTCTCCAGTGAGCACCTTGATCATGGTCGATTTGCCAGCACCGTTGGGTC 1678 Query 225156 CAATCACGCCAATCCGGGATGA 225177 |||| | || | || ||||| Sbjct 1679 CAATGATACCCACTCGTGATGA 1700 Score = 84.2 bits (92), Expect = 4e-11 Identities = 200/302 (66%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 225337 GTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTT 225396 |||||| ||| ||||| || ||||| | || || ||||||||||| || | Sbjct 1863 GTAGTAGGATCGTGCCTCTGGGCGCTTCTCAACAAACTTGGACAGGTTTCCCTTGTAATA 1922 Query 225397 CGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCC 225456 | ||||| |||| ||| || |||| || | ||| || ||| | ||| Sbjct 1923 GGCCAGCTT---CTTCTGCTCATAGTGAATGATATGAGTGCAGACATTGTCCAAAAAGGT 1979 Query 225457 AGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAG 225516 |||||||| || ||| ||||| | | ||| | | | ||| ||| | | | || Sbjct 1980 CGAGTCGTGCGAAACAGTGATGCAGGTCACCTCCTTTTGGCTAACGAGATACTCTACCAG 2039 Query 225517 CCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| ||||||||| || |||| || || |||||||| || ||||| || |||||||| Sbjct 2040 CCACGCCACGTTGGCAACATCCAGATGATTCGTAGGTTCATCAAGAAGAAGAATGTCAGC 2099 Query 225577 ATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 | |||| ||||| || | || ||||||||| ||||| || || || || | || Sbjct 2100 TTTGGTGAGCATGGCACGAGCCAGTTCCAGCTTCATCTTCCAACCACCCGAGAGAGTCCC 2159 Query 225637 GA 225638 || Sbjct 2160 GA 2161 >seq928 Length=10049 Score = 89.7 bits (98), Expect = 9e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| | |||||||||||| | |||||||| || || || ||| | Sbjct 1408 GAATTCTGAATTGTGAGAAATAATAATGACACCGCCTCCAAAATCGGTAATGGCACCAGC 1467 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 ||| || ||||| || || || ||||| |||| || |||||||| || | || | ||| Sbjct 1468 AAGAGCACCAAGAGAGTCACGATCAAGATAGTTGGTAGGCTCATCAAGAACGAGCATGTG 1527 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 || | ||||| || |||| || | ||| ||||| ||||| ||||| || || Sbjct 1528 AGGCTGGTTCCACATACAAGCGCCAAGAACAACCTTGACCTTTTGACCACCAGAAAGACC 1587 Query 224617 GCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACC 224655 || || |||||||| | | || |||||||||||||| Sbjct 1588 TCGCATACGCGAGTGCGATGAAAACTCGGGGTCAAGACC 1626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921560674339760