Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3174 123 6e-23 seq1447 87.8 4e-12 >seq3174 Length=2562 Score = 123 bits (136), Expect = 6e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| ||||| || ||||| |||||||| || | |||| Sbjct 1841 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGG 1782 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || || || || || || || || || |||| ||| || ||||| Sbjct 1781 ATTCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACC 1722 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || ||||| |||||||||||||| |||||| Sbjct 1721 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATT 1674 >seq1447 Length=6688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || || |||| || || || ||||| || ||||| | Sbjct 2183 CCTCCACGGAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAA 2242 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || || || ||||| ||||||||||| || | ||| Sbjct 2243 AGAGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGG 2302 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 ||||| ||||||||||| || || || || || || || |||| Sbjct 2303 ATTCCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAG 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179573417462724