Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1370 111 2e-19 seq296 104 3e-17 >seq1370 Length=7093 Score = 111 bits (122), Expect = 2e-19 Identities = 243/364 (67%), Gaps = 0/364 (0%) Strand=Plus/Minus Query 114947 CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCA 115006 ||| |||| | ||||| | || ||| ||||| ||||| ||||||||||| || ||| Sbjct 5877 CCACCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCA 5818 Query 115007 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGC 115066 | ||| | |||||||| || |||| || | | |||| | || |||| Sbjct 5817 TTGGATAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTT 5758 Query 115067 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 115126 | |||||||| || || ||||||||| || || | | || | |||||| Sbjct 5757 AAGCCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATG 5698 Query 115127 CCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGT 115186 || || || || ||| ||| | | | || | ||| || || ||||||||||| || Sbjct 5697 CCTTCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGG 5638 Query 115187 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCG 115246 |||||||| || ||||| || |||| |||||| |||| | || |||||| || | Sbjct 5637 GTACCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTG 5578 Query 115247 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 115306 || ||||| | | | || | ||| || |||||||| || | | ||| ||||| | | Sbjct 5577 TAAGTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAGC 5518 Query 115307 ATGT 115310 |||| Sbjct 5517 ATGT 5514 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || ||||||||||| |||| ||||||| | | ||| || | |||||| || || Sbjct 6679 GAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATTCAACAATTTCTGTGCAT 6620 Query 114536 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATC 114594 ||||| | ||| ||||| || | ||||| || || || |||| | || || ||||| Sbjct 6619 AAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGA-TTTGCGATTGCATGCATC 6561 Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 114633 |||||||||||||||||| || || ||||| |||| || Sbjct 6560 CTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGA 6522 >seq296 Length=20057 Score = 104 bits (114), Expect = 3e-17 Identities = 210/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATACTCCTTACC 172710 ||||||||| ||||| | | ||||| || || ||| |||| | ||| | || || Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 172711 CTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGC 172770 ||||| || |||| || | ||||| | || | |||| || ||| | || | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTCTGCATTGCCTGTAATCTGAGA 13289 Query 172771 CACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATC 172830 || ||| || |||||||| | ||| || || ||||| |||||||| ||| || Sbjct 13290 ATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGTC 13349 Query 172831 ACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCAC 172890 ||||||||| || ||||| |||| ||| || |||| ||| || || ||||| || || | Sbjct 13350 ACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTGGCAGAGTCACCTTCAGTGAG 13409 Query 172891 GATGAGCGTACACT---TTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 172947 || | || || | |||| ||| | || || || ||||| |||||||| || || Sbjct 13410 AATTAATGTGCATTTGCTTCC--ATTCCG-AGTTCCAGCATTGTTGGCATCGTCTAATTT 13466 Query 172948 GGGAATACC 172956 | |||||| Sbjct 13467 AGTAATACC 13475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597313592242640