Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1447 98.7 1e-15 seq3174 96.9 3e-15 seq274 82.4 8e-11 >seq1447 Length=6688 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || || || |||||||| |||| | || || |||| Sbjct 2197 AAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCGTC 2256 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||| || |||| || ||||||||||| ||||| ||||| ||||| || Sbjct 2257 TTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATTCCCTCTTTATC 2316 Query 64351 TTGTATTTT 64359 || || || Sbjct 2317 CTGAATCTT 2325 >seq3174 Length=2562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| |||| || || ||||| || ||| | ||||| ||||||||||| || || ||| Sbjct 1838 GTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATT 1779 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCT 64399 ||||| || ||||| || || ||| ||| || | |||||| | || || || Sbjct 1778 CCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCA 1719 Query 64400 ACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 | || | ||||||||| |||| || || ||||| ||||||||| || Sbjct 1718 AGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATTGTA 1671 >seq274 Length=20666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || ||||| || || |||||||| | | || || | || Sbjct 19197 AGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAAAGAGTACGGCCATCC 19138 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || |||| | ||||||||||| || || ||||| ||||| ||| Sbjct 19137 TCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCT 19078 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || ||||| | || | ||| Sbjct 19077 TGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATTGTC 19018 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 || || || | || || || || |||||||| ||| || Sbjct 19017 TTACCCGTAAGGGTCTTGACAAAGATTTGCATACTAAAAA 18978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499611336289520