Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq624 152 5e-32 seq1370 98.7 1e-15 >seq624 Length=13322 Score = 152 bits (168), Expect = 5e-32 Identities = 360/527 (68%), Gaps = 25/527 (5%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGC- 52384 || || ||| ||||||||||||| | |||||| | ||||||||| | || || | Sbjct 7884 GTACCTTGCATTCGCAAAAAGGCCGACTGGGCACTCAAGTGGATCTCG---GATACGGAA 7828 Query 52385 -CACGCTG-GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 || ||| | | ||| | || || || || |||||||| | ||||| || || Sbjct 7827 TCAAGCTTTGGAGTGCGGCTTGTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGGA 7768 Query 52443 AGCTTTGCCGCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 |||||| |||||||||| | || |||| || | |||||||||||||| ||| Sbjct 7767 TCCTTTGCAGCCATCTTTTGGCTCAAGAAACGT--GGTCTTATGCCCGGCCTGACATTCT 7710 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACA 52560 ||||||||||| || || || || || || || || |||||||| || || | | || Sbjct 7709 CTAACGAGTTGATTTCACGTGATGAGGGTCTTCATACCGACTTTGCTTGTCTATTGTTCA 7650 Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGC---ATGTTCAAGGAGG 52617 | | | | | ||| || | | ||| || | || | || || | |||| Sbjct 7649 ---CACTCCTCAA-GAATAA--GCCAGCAGACTCGGTTGTGCACCAAATCTTGACCGAGG 7596 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || ||||| ||| ||||||| | || | ||||| || || | ||| | ||||||| Sbjct 7595 CAGTTGCTATTGAACAGGAGTTCCTGACCGAGGCGCTCCCAGTTGCACTGATTGGCATGA 7536 Query 52678 ACGCGCAGTC-CATGTGCGAG-TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 | || || || |||| ||| || || |||||||| || || ||||| || || | || Sbjct 7535 ATGC-CAATCTCATGAA-GAGATATATTGAGTTTGTTGCTGACCGTCTCTTTTTGGAACT 7478 Query 52736 CGGGCAGCC-AAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 ||||| || |||| | | | || | ||||| ||||| || ||| | | || || | Sbjct 7477 CGGGCTCCCCAAAGCA-TACGGCGTTGAGAATCCATTTGATTTCATGGAAATTATCTCTC 7419 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 | | ||||| ||||||||||| || |||||||||||||||||| || Sbjct 7418 TGCAAGGCAAAACCAACTTTTTTGAAAAGCGAGTCGGCGAGTATCAG 7372 >seq1370 Length=7093 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 ||||||||| || ||| ||| || | | |||||||||||| | ||||||| || Sbjct 5704 GTAGATGCCTTCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGG 5645 Query 154307 AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT 154366 | | || || || |||||| ||||| ||||| || || | |||| | ||| Sbjct 5644 ATGAGGGGTACCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACAT 5585 Query 154367 CATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 | ||| || || ||||| |||||| ||||| ||||||||||| | ||||| || Sbjct 5584 GAGATTGTAAGTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACG 5525 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGC 154453 ||| ||||||||||| ||||| || || Sbjct 5524 CATCAGCATGTGCTGAGGACGCTCAGC 5498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496229162825760