Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq274 89.7 5e-13 seq1193 84.2 2e-11 >seq274 Length=20666 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || || || || || || || || |||||||| ||||| Sbjct 19212 CCTCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAA 19153 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || ||||| ||| | ||||| || |||||||| || || Sbjct 19152 AGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGG 19093 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||||||||| || || |||| || | ||||||||| ||||||||| Sbjct 19092 ATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACT 19033 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || || || || || || || ||||| |||||||| Sbjct 19032 TCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 >seq1193 Length=8092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 123601 AAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATC 123660 |||| || || || || || |||||||| ||||| || || ||||| | ||| |||| | Sbjct 7293 AAGT-GAGACTGGTACCCCATACATGCTTTACAAGGATGCATGCAATCGCAAATCCAACC 7235 Query 123661 AGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCG 123720 || ||| | ||||| || ||||| || ||| | ||| | || ||| | |||||| Sbjct 7234 AGCAGAACCTTGGAACCATCAAATGCAGCAATTTATGCACAGAGATTGTTGAATACTCGT 7175 Query 123721 ATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 | | ||| | ||||| || ||||||||||| ||| || Sbjct 7174 CTCCGGATGAGGTGGCTGTTTGTAATTTGGCCTCGCTT 7137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451972927085680