Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1370 114 2e-20 seq296 107 2e-18 seq197 82.4 9e-11 >seq1370 Length=7093 Score = 114 bits (126), Expect = 2e-20 Identities = 246/365 (67%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 ||| |||| | ||||| | || || |||||| ||||| ||||||||||| || ||| Sbjct 5877 CCACCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCA 5818 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATCGTGGATGTG 117026 | ||| | |||||||| || |||| || | | | | |||| | ||| |||| Sbjct 5817 TTGGATAGACCATTTGTTCCAGCAATATATGAACCAGAAGAC-CTGATCTTGTGAATGTT 5759 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 | |||||||| || || ||||||||| || || | | || | |||||| Sbjct 5758 TAAGCCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGAT 5699 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 || || || || ||| ||| | | | || | ||| || || ||||||||||| || Sbjct 5698 GCCTTCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGG 5639 Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATC 117206 |||||||| || ||||| || |||| |||||| |||| | || |||||| || Sbjct 5638 GGTACCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATT 5579 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 ||| ||||| | | ||| | ||| || |||||||| || | | ||| ||||| | Sbjct 5578 GTAAGTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAG 5519 Query 117267 CATGT 117271 ||||| Sbjct 5518 CATGT 5514 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||||||||| |||| ||||||| | | ||| || | |||||| || || Sbjct 6679 GAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATTCAACAATTTCTGTGCAT 6620 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATC 116555 ||||| | ||| ||||| || | ||||| || || || |||| | || || ||||| Sbjct 6619 AAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGA-TTTGCGATTGCATGCATC 6561 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 |||||| ||||| ||||| || || ||||| |||| || Sbjct 6560 CTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGA 6522 >seq296 Length=20057 Score = 107 bits (118), Expect = 2e-18 Identities = 211/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTACC 176730 ||||||||| ||||| | | ||||| || || ||| |||| | ||| | || || Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 176731 TTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGC 176790 ||||| || |||| ||| | ||||| | || | |||| || ||| | || | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTCTGCATTGCCTGTAATCTGAGA 13289 Query 176791 CACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATC 176850 || ||| || |||||||| | ||| ||||| ||||| |||||||| ||| || Sbjct 13290 ATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGTC 13349 Query 176851 ACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCAC 176910 ||||||||| || || || |||| ||| || |||| ||| || || ||||| || || | Sbjct 13350 ACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTGGCAGAGTCACCTTCAGTGAG 13409 Query 176911 GATGAGCGTACACT---TTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTT 176967 || | || || | |||| ||| | || || || ||||| |||||||| || || Sbjct 13410 AATTAATGTGCATTTGCTTCC--ATTCCG-AGTTCCAGCATTGTTGGCATCGTCTAATTT 13466 Query 176968 GGGAATACC 176976 | |||||| Sbjct 13467 AGTAATACC 13475 >seq197 Length=23843 Score = 82.4 bits (90), Expect = 9e-11 Identities = 201/297 (68%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 12696 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 12755 |||| |||||||| ||||| ||||| || | || ||| || | ||| ||||| Sbjct 12576 ATCTGGCGATCAAATCGACCAGGGCGAAGTAAAGCCGGGTCCAGCACATCGGGTCGGTTA 12635 Query 12756 GTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAG 12812 || |||| | || || | | || ||||| || || || ||||| || |||| Sbjct 12636 GTTCCCGCAAGCACTACAA--CATGT-TCGTTGGAGTCAAATCCGTCCATTTCTA-CAAG 12691 Query 12813 A-GTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACC-CGCACTG--CG 12868 | |||| || | ||| |||||||||||| || | ||| ||| | | || || Sbjct 12692 AAGTTGGTTAAGGGTGCTTTCACGTTCATCGTTTCCACCCATCTGACCTCCCTTTGATCG 12751 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| || | |||||||||||| |||||||||| || ||||| ||| | ||| Sbjct 12752 AGCCTTGCCTATGGCGTCAATTTCATCAATGAAAATAATGCACGGAGCATTCTTTTTGGC 12811 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | |||||| ||| ||||||| | | ||||||||| ||||||||||| | ||| Sbjct 12812 GCTTGCAAAGAGATCACGCACTCGCGAAGAACCGACACCGACAAACATCTCAATAAA 12868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613466110355280