Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq274 107 2e-18 seq1447 84.2 2e-11 >seq274 Length=20666 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||||||||| || || ||||| || | || || |||||||| || ||||| Sbjct 19177 CTCTTTCTGGATATTGTAATCCGAAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAA 19118 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | ||| || || |||||| ||||| | Sbjct 19117 AATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTGGATCTTGGCCTTGACATT 19058 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| ||||| || || ||||| || || || || Sbjct 19057 ATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGAC 18998 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 18997 AAAGATTTGCAT 18986 >seq1447 Length=6688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| || ||||||||||| ||||| Sbjct 2218 CTCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAA 2277 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| ||||||||||| | || | | ||| || ||| ||||| ||||| Sbjct 2278 AATCAGACGCTGCTGGTCAGGAGGGATTCCCTCTTTATCCTGAATCTTGGCCTTGA 2333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200543158160