Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2011 480 1e-130 seq441 120 4e-22 seq1370 114 2e-20 >seq2011 Length=4578 Score = 480 bits (532), Expect = 1e-130 Identities = 1043/1554 (67%), Gaps = 20/1554 (1%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||||||| | || | || || ||||| ||||| |||||||| || || || Sbjct 754 TCATCTTCAGCCTTGAATTTCTCGGCATCAGACACCATGCGCTCAATGTCCTCCTTGGAA 813 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || || ||||| | |||| || | | ||| || || Sbjct 814 AGACGACCCTTGTCGTTTGTGATGGTGATCTTGTTGGATCGGCCAGTAGTCTTGTCAACA 873 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | || || | |||||| || ||||| ||||| || | || | || || || | Sbjct 874 GCGTTAACGTTGAGAATACCGTTGGCATCGACATCAAAGGTCACTTCAACCTGGGGGACA 933 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| || ||||| | | ||||| | || || || |||| ||| | Sbjct 934 CCACGGGGGGCGGGAGGGATACCAGAGAGTTCAAACTTGCCGAGCAAGTTGTTGTCCTTG 993 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | |||| ||||||||| |||| | |||| ||| | || || || || Sbjct 994 GTACGGGTACGCTCACCTTCAAAGACCTGAATTAACACACCGGGCTGGTTGTCAGCATAG 1053 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| || ||||| | || | || || || | | || | |||||| Sbjct 1054 GTGGAGAAGACTTCAGACTTCTTTGTGGGGACAGTAGTGTTACGCTTGATGAGAGGGGTC 1113 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | ||| || ||| |||| || ||||| ||||| | ||| || | | | || | Sbjct 1114 ATCACACCGCCAGCAGTCTCGATACCGAGAGATAGAGGGGCCACATCGAGCAAAAGCAAG 1173 Query 6989 TCTTGAACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 || || || ||| || ||||| || | ||||| || || || | || Sbjct 1174 TCCTGGG-----TC-TTCTCTGAGGTATCACCAGTGAGAATGGCAGCCTGAACGGCGGCA 1227 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 || ||||| || |||||||||||||| |||| || || | || || ||||| ||||| Sbjct 1228 CCATATGCAACAGCCTCATCGGGGTTGATCGACTTGTTGGGCTCCTTTCCGTTGAAATAG 1287 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | | | ||||| || || || || || |||||||| || | ||| | ||| Sbjct 1288 TCGGAGATGAGCTTCTGAATCTTGGGAATACGGGTAGATCCACCAACAAGAACAACTTCG 1347 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | || || || || || ||||| || || || || || || || || | Sbjct 1348 TGGACAGAGCCCTTGTCAATTTTAGAGTCACGGAGAACCTTGTCAACGGGGTCAATGGTT 1407 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||| | || || || ||||| ||||| |||||||| ||||| |||||||| Sbjct 1408 CCACGGAAGAGATCAGCGCAGAGCTCCTCGAAACGAGCACGGGTGATGGAGGTATAGAAG 1467 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 ||||| || ||| | | || || ||||| |||| || || || | || |||| || Sbjct 1468 TCAACACCTTCGAAAAGAGAGTCGATTTCGATGGAAGTCTGAGCGGCAGATGATAGAGTG 1527 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 |||||||| ||||| || || || || | |||||| || ||||| ||||| | || | Sbjct 1528 CGCTTTGCACGCTCGCAAGCAGTACGGAGACGACGGAGAGCACGGGGGTTGGAAGTAAGA 1587 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || ||||| | || || || ||||| ||||||||||| || || | || || Sbjct 1588 TCCTTCTTGTACTTTCGCTTGAACTCGTCAGAGAAGTGAGAAACAAGACGGTTGTCAAAG 1647 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||| | || || || || || || || ||||| ||||||||||| | ||| Sbjct 1648 TCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACCTCAAAGATACCATCCTCA 1707 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 || | | | || |||||||| ||||||||||| || || |||||||| |||||| | Sbjct 1708 ATAGTGAGGAGGGAGACATCAAAAGTACCACCACCAAGATCGAAAATGAGAACGTTCTTT 1767 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| || | | ||||| || |||||||| || || || || || || || || ||||| Sbjct 1768 TCGCCGGCAGTCTTCTTGTCAAGACCGTAGGCAATGGCAGCTGCAGTAGGCTCGTTAATG 1827 Query 7643 ATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 |||| || |||| || ||||||| ||| | ||||| || || || || || || || Sbjct 1828 ATACGGAGGACA-TTGAGGCCAGAAATGACACCAGCATCCTTGGTAGCCTGACGCTGGGA 1886 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| ||||| || ||||| || || || || ||| |||| | | ||||| || | Sbjct 1887 GTCGTTGAAGTAAGCGGGGACAGTGACAACGGCATCCTTGACAGTGGTGCCGAGGTAAGC 1946 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 ||| || | || ||||| || |||||||| ||||||||||| || | | || Sbjct 1947 TTCGGCAGTCTCCTTCATCTTAAGGAGAACCATGGATGAAATCTCCTCGGGGGTGAAAGT 2006 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 || || ||||| || || ||||| | || || || || || || | | || || Sbjct 2007 CTTGGTCTCACCCTTGAACTCAACCTGGATGATTGGCTT-TC--CACCCTTGTTGACGAC 2063 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | ||||| | ||||| || || |||| ||| ||| | ||||| Sbjct 2064 CTTGAAGGACCAGTGCTTCATGTCAGACTGAACCTCAGCATCCTCAAATCGACGACCGAT 2123 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 | |||||| || ||||| || ||||| ||||||||||||| |||||||| || || Sbjct 2124 CAAACGCTTGGCGTCAAAGACGGTGTTGGTGGGGTTCATGGCGACCTGGTTCTTGGCGGC 2183 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 || || || ||||| || | || | || | || || ||||| || || || || Sbjct 2184 ATCACCAATGAGACGCTC---GCTGTCAGAGAAACCAACATATGATGGAGTAGTGCGGTT 2240 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || |||||||| ||||| || || || |||||||||||||| |||||||| || Sbjct 2241 TCCCTGGTCGTTGGCAATGATCTCAACACGGTCGTTTTGCCAAACGCCGACACA 2294 >seq441 Length=16304 Score = 120 bits (132), Expect = 4e-22 Identities = 239/353 (68%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 7739 GTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 ||||| || ||||||||| | || || || || ||||| ||| || ||||| | Sbjct 1813 GTGACGTTAGCACCGAGATATGCCTCTGCAATGTCCTTCATCTTGCCGAGCACCATGGCA 1872 Query 7799 GAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGT 7858 || |||||||||| | ||||| ||| |||||||| || | | ||||| | | |||| Sbjct 1873 GAGATCTCTTCAGGGGTAAACTTTTTGGTTTCACCCTTGACCTGAACTTGGAACTTGGGA 1932 Query 7859 TTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT 7918 || || | | | | ||||||| | | ||||| |||||| || | || || | Sbjct 1933 CTACCCTTATC---GTTAACAACCTTAAATGGCCAATGTTTCATGTCAGCCTGAACATCC 1989 Query 7919 TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC 7978 | ||| ||| | || | |||||||| |||||||| | || || |||||| Sbjct 1990 TTGTCGTCAAATCGGCGACCAACCAGACGCTTGGCATCAAAGATGGTATTGAATGGGTTC 2049 Query 7979 ATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCG 8038 || | |||||||| || | || || | |||||| ||||| | | ||||| ||| Sbjct 2050 GAGGGAGCCTGGTTCTTTGCAGGATCACCAACAAGACGCTCATTGT---CGGTAAAGGCG 2106 Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 || || || || || | || || || |||||||| ||||||||||| || || Sbjct 2107 ACATAAGAGGGAGTGATACGGTTACCCTGGTCGTTGGCAATAATTTCAACACG 2159 >seq1370 Length=7093 Score = 114 bits (126), Expect = 2e-20 Identities = 236/349 (68%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 105658 TCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACG---ACGC 105714 |||| ||||| ||||||||||| || | ||| | |||| || ||| || | Sbjct 5937 TCGAATATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTG 5878 Query 105715 CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCA 105774 || | |||| ||||||| || || |||| | || |||| |||||||||||| ||| Sbjct 5877 CCACCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCA 5818 Query 105775 TCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGT 105834 | |||| |||||||||||| ||||| ||| | | | | | ||||| || | Sbjct 5817 TTGGATAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTT 5758 Query 105835 AACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATA 105894 || |||||||| ||||| ||| ||| ||||| |||| ||| ||| || Sbjct 5757 AAGCCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATG 5698 Query 105895 CCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGT 105954 || || || ||| |||| | | | | || |||||| ||||||||||| || Sbjct 5697 CCTTCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGG 5638 Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCG 106003 ||||||||||| || || || |||| ||| || |||| |||| ||||| Sbjct 5637 GTACCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAA-AAACTTTTCG 5590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635090261980720