Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1370 140 4e-28 seq296 109 7e-19 seq624 100 4e-16 >seq1370 Length=7093 Score = 140 bits (154), Expect = 4e-28 Identities = 291/429 (68%), Gaps = 11/429 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| ||||| | || || || || || || | || ||| Sbjct 5507 CCTCAGCACATGCTGATGCGTGTCGCTGTTGGCATTCACGGTGATGACGTCGAAGCTGCC 5566 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| | |||||| | |||| ||||||| |||| || ||||| Sbjct 5567 ATTGAGACTTACAATCTCATGTCCGAAAAGTTTTTCACCCACGCATCACCCACGCTCTTT 5626 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || |||||||| || || |||||||| ||||||||| | | | | |||| ||| Sbjct 5627 AATGCTGGTACCCCTCATCCACAAATGTCTAGTTGTTTCTTGCTCACCATTGAGGATGAT 5686 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | ||||| ||| || || | ||||||| ||||||||| |||||| Sbjct 5687 TCCATTGAAGGCATCTACTCTACCCTAAAGACATGTGCCATGATCTCAAAGACTGCTGGT 5746 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG-TCTCGTATTAGAGGTACAAA 111910 ||||| || | |||| || | |||| | | | | || |||| || ||||| Sbjct 5747 GGTATTGGCTTAAACATTCACAAGATCAG-GTCTTCTGGTTCATATATTGCTGGAACAAA 5805 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||||| ||| |||| |||||||||||||| ||||| |||||| ||| || || ||||| Sbjct 5806 TGGTCTATCCAATGGCATTATTCCAATGCTACGCGTCTTTAACAACACTGCCCGATATGT 5865 Query 111971 AAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 | || | ||| ||| | || || || | || | ||| ||||||||||||| Sbjct 5866 GGATCAGGGTGGCAATAAGCGGC-CA--GGTGCTTTTGCCATGTATATTGAGCCATGGCA 5922 Query 112025 CGCGGATAT 112033 ||| ||||| Sbjct 5923 CGCTGATAT 5931 >seq296 Length=20057 Score = 109 bits (120), Expect = 7e-19 Identities = 210/307 (68%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACC 176823 ||||||||||||||| | | | ||||| || || ||| |||| | |||| | || || Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 176824 CTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGT 176883 ||||| || |||| || | ||||| |||| | |||| || ||| | ||| | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTCTGCATTGCCTGTAATCTGAGA 13289 Query 176884 GACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATC 176943 | || ||||| ||||| | ||| || |||||||| || ||||| ||| || Sbjct 13290 ATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGTC 13349 Query 176944 GCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCAC 177003 |||||||| || || || || | |||||| || | || ||||| ||||| || || | Sbjct 13350 ACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTGGCAGAGTCACCTTCAGTGAG 13409 Query 177004 GATGAGTGTACACTTGC-CAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGG 177062 || | ||| || |||| ||| | || || || ||||| ||||| || ||||| | Sbjct 13410 AATTAATGTGCATTTGCTTCCATTCCG-AGTTCCAGCATTGTTGGCATCGTCTAATTTAG 13468 Query 177063 GAATACC 177069 |||||| Sbjct 13469 TAATACC 13475 >seq624 Length=13322 Score = 100 bits (110), Expect = 4e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || |||| || || || || ||||| | |||||| | ||||| | || Sbjct 7885 AGTACCTTGCATTCGCAAAAAGGCCGACTGGGCACTCAAGTGGATCTCGGATACGGAATC 7826 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||||| | ||| || | |||||||| ||| ||||||||||| ||||| || Sbjct 7825 AAG---CTTTGGAGTGCGGCTTGTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGG 7769 Query 102227 TTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 ||||| ||| || || | |||||||||||| || ||||| ||||| || || |||| Sbjct 7768 ATCCTT-TGCAGCCATCTTTTGGCTCAAGAAACGTGGTCTTATGCCCGGCCTGACATTCT 7710 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 | |||||| | || || ||||| ||||| || || Sbjct 7709 CTAACGAGTTGATTTCACGTGATGAGGGTCTTCA 7676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620700825777760