Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq197 134 2e-26 seq1193 104 3e-17 seq1370 87.8 2e-12 >seq197 Length=23843 Score = 134 bits (148), Expect = 2e-26 Identities = 345/516 (67%), Gaps = 27/516 (5%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||| || ||||| ||||| |||| ||| || || | |||| ||||| Sbjct 12575 AATCTGGCGATCAAATCGACCAGGGCGAAGTAAAGCCGGGTCCAGCACATCGGGTCGGTT 12634 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612 || | |||| ||||||| || || ||| || || |||||||||||| || Sbjct 12635 AGTTCCCGCAAGCACTACAA---CATGTTCGTTGGAGTCAAATCCGTCCATTTCTACAAG 12691 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCC---GAACG 11669 ||| ||||| | || |||||| |||||||| ||| |||| || || || Sbjct 12692 AAGTTGGTTAAGGGTGCTTTCACGTTCATCGTTTCCACCCATCTGACCTCCCTTTGATCG 12751 Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGG------TTGGTTGGC 11723 ||| || | |||||||| ||||| ||||| | || ||||| | ||||| Sbjct 12752 AGCCTTGCCTATGGCGTCAATTTCATCAATGAAAATAATGCACGGAGCATTCTTTTTGGC 12811 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 | || | || || ||||| || ||| | || ||||| || |||||||||| Sbjct 12812 GCTTG------CAAAGAGATCACGCACTCGCGAAGAACCGACACCGACAAACATCTCAAT 12865 Query 11784 GAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGA 11841 || | || |||| || ||||| ||||||||| | ||| ||||| | || || | Sbjct 12866 AAACTCTGAACCAGATACGCTGAA-GAAGGGAACGCCCGCCTCGCCAGCAGTTGCCTTG- 12923 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTG 11901 || || || || || || || ||||| | || | ||| | |||||| |||||| || Sbjct 12924 GCAAGAAGTGTTTTTCCTGTTCCAGGAGGTCCGGAGAGTACGGCGCCTTTGGGGATTTTT 12983 Query 11902 GCACC-ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTC 11960 ||||| | || | | ||| |||| || |||||||| || | |||| |||| || ||| Sbjct 12984 GCACCTAGTTTCTCA-TAGTGCTCGGGATTCTTGAGAAACTTGACAAACTCCATAATTTC 13042 Query 11961 CTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||||||| ||| || || | ||||| |||| Sbjct 13043 TTCCTTGGCCTCGTCCATTCCAGCGACATCCTTGAA 13078 >seq1193 Length=8092 Score = 104 bits (114), Expect = 3e-17 Identities = 237/354 (67%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 109501 TTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACAC 109560 |||| ||||| || ||||| || ||| |||||| ||||| || | ||| || ||| | Sbjct 6153 TTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCAGCGAGGTCAATAATAACC 6212 Query 109561 TTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACG 109620 ||||| |||||||| ||||| ||||| | |||| || || ||| | Sbjct 6213 TTTTGTGAGATTTCCCATACAGTTTTGTAGATGGCTTTGAGTTCGCTAGGGATGCTCTGA 6272 Query 109621 ATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGA-CCAGAG 109679 ||| ||| ||||| || || | ||| | | |||||| || || |||||| Sbjct 6273 ATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTTCATG-CTGTCATTCCAGAG 6331 Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 |||| || | ||||| | | |||||| | ||||| | |||||||||| ||| Sbjct 6332 TCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAATCTGGAATTCACCAGAAAG 6391 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || | | |||||||||| || || || || ||| |||||||||||| || || Sbjct 6392 CACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGCCTCATTGTTGCCCAGAAT 6451 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||| | || || ||||| ||||| ||||| | || | |||||| || | ||| Sbjct 6452 TTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACTGTTACGAACACC 6505 >seq1370 Length=7093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 |||||| | |||||| || || || ||| | ||| ||| || | ||||| ||| || Sbjct 6641 GTATTCAACAATTTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTT 6582 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 |||||| |||||||||||||| || |||||||||||||||||||| || Sbjct 6581 GGATTTGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTC 6531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588936553332400