Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1370 150 2e-31 seq624 91.5 2e-13 seq1193 84.2 3e-11 >seq1370 Length=7093 Score = 150 bits (166), Expect = 2e-31 Identities = 286/421 (68%), Gaps = 9/421 (2%) Strand=Plus/Minus Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942 ||||| |||||||||||||||| ||| | || | || || | | ||| ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACC---TGGCCGCTTATTGCCA 5875 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 | |||| ||||| || || ||| |||||| ||||| |||||||||||||| |||| Sbjct 5874 CCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTG 5815 Query 107003 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 107062 ||| |||||||||| || |||| || | | || | | || |||| | Sbjct 5814 GATAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAG 5755 Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 |||||||| ||||| ||||||||| ||||| | | || || ||||| || Sbjct 5754 CCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCT 5695 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | || || || |||| ||| || | ||| ||||| ||||| || || || ||| Sbjct 5694 TCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTA 5635 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 |||||||| ||||| || |||| |||||| |||| | || |||||| | ||| Sbjct 5634 CCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAA 5575 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | | ||| || | ||| || ||||| ||||| | || |||||||| | |||| Sbjct 5574 GTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAGCATG 5515 Query 107303 T 107303 | Sbjct 5514 T 5514 >seq624 Length=13322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||||||||| || ||||| | || || ||||| ||||| ||||| ||||| Sbjct 7676 TGAAGACCCTCATCACGTGAAATCAACTCGTTAGAGAATGTCAGGCCGGGCATAAGACCA 7735 Query 117346 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||| | |||| | || || ||| || || || ||||| ||||||||||| ||| Sbjct 7736 CGTTTCTTGAGCCAAAAGATGGCTGCA-AAGGATCCTGAGAAAAAGATACCCTCGACAGC 7794 Query 117405 CGCAAACGCAAAAAGGCGC 117423 ||||| |||| ||| ||| Sbjct 7795 AGCAAATGCAACAAGCCGC 7813 >seq1193 Length=8092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/137 (74%), Gaps = 9/137 (7%) Strand=Plus/Plus Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942 ||||| |||||||||||||||| ||| | || | || || | | ||| ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACC---TGGCCGCTTATTGCCA 7935 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 | |||| ||||| || || ||| |||||| ||||| |||||||||||||| |||| Sbjct 7936 CCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTG 7995 Query 107003 GATTGACCATTTGTCCC 107019 ||| |||||||||| || Sbjct 7996 GATAGACCATTTGTTCC 8012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589941286035920