Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq274 145 2e-29 seq1447 123 6e-23 seq3174 111 3e-19 >seq274 Length=20666 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| |||||||| || ||||||||||| | |||||| | ||||| || Sbjct 19195 AACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAAAGAGTACGGCCATCCTC 19136 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | || || ||||| || || || || ||||| ||||| Sbjct 19135 AAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTG 19076 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || ||||||||||| || || ||||| | ||| | ||||| Sbjct 19075 GATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATTGTCTT 19016 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 19015 ACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 >seq1447 Length=6688 Score = 123 bits (136), Expect = 6e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||| || || || ||||| || | |||||| | || ||||| Sbjct 2200 AACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCGTCTTC 2259 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || || || || ||||| ||||| || || ||||| || || Sbjct 2260 AAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATTCCCTCTTTATCCTG 2319 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||| || |||||| || ||||| ||||| || Sbjct 2320 AATCTTGGCCTTGACATTGTCAATAGTGTCTGA 2352 >seq3174 Length=2562 Score = 111 bits (122), Expect = 3e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 194973 AAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG 195032 |||||| | || || ||||| ||||| || || ||||| || || || ||||| || || Sbjct 1842 AAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGG 1783 Query 195033 AATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCAC 195092 || ||||| ||||||||||| || |||||| || ||||| || || ||| || || Sbjct 1782 GATTCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTAC 1723 Query 195093 TTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| | ||||| || |||| || || ||||| | ||||||| Sbjct 1722 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATT 1674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109405434781586