Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1370 163 3e-35 seq624 138 1e-27 seq1193 100 3e-16 >seq1370 Length=7093 Score = 163 bits (180), Expect = 3e-35 Identities = 370/552 (67%), Gaps = 6/552 (1%) Strand=Plus/Minus Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 ||||||||| |||||||| || | ||| || || | ||||||| || ||||| || || Sbjct 5932 TATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACC 5873 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | ||||| |||||| |||||| | || | || |||||| | ||| ||||| || Sbjct 5872 CTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGA 5813 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 || |||||| ||||| | |||||| ||| || || || || ||| | || Sbjct 5812 TAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCC 5753 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| || | || || || | ||||| || |||||| || || ||||| Sbjct 5752 AATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTC 5693 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || |||||| || | | | ||||||||||||||||| |||||| || || Sbjct 5692 AATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACC 5633 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | |||||| | || || ||||| || | || | || || || | | || || || Sbjct 5632 AGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGT 5573 Query 48665 TTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATAT 48723 ||||| ||| || | || || | || || || | || |||||||| | ||| | Sbjct 5572 CTCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGT 5514 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 ||||| | ||| || ||||| || || || ||||| || || | || | Sbjct 5513 GCTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCT 5454 Query 48784 TAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCT 48841 | || ||||| |||||||| ||||| ||| |||| ||||||| ||||| | | Sbjct 5453 TGAAGCCAAAGTAGTTGTAGTTGAAATCTCG--GTCATATATAATTGCCGAATTGAGGCG 5396 Query 48842 TTCCTTATGTTT 48853 ||| |||||| Sbjct 5395 GTCCGAATGTTT 5384 >seq624 Length=13322 Score = 138 bits (152), Expect = 1e-27 Identities = 344/518 (66%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 18655 TTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCC 18714 |||||||| || | || ||||| ||| | |||| |||||||| || || ||||| || Sbjct 7355 TTCATTACACCACTCTTCTGATACTCGCCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCT 7414 Query 18715 TCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT 18774 | | || ||| |||||| |||||||||||||| | || ||| ||| || Sbjct 7415 TGCAGAGAGATAATTTCCATGAAATCAAATGGATTCTCAACGCCGTATGCTTTGGGGAGC 7474 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 || | ||| || | || | || || ||||| | ||||||| | ||||| | || | Sbjct 7475 CCGAGTTCCAAAAAGAGACGGTCAGCAACAAACTCAATATATCTCTTCATGAGATTGGCA 7534 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || || | | ||| || || || || || || || || ||||| ||| ||| Sbjct 7535 TTCATGCCAATCAGTGCAACTGGGAGCGCCTCGGTCAGGAACTCCTGTTCAATAGCAACT 7594 Query 18895 GCCTCTG-ATATAATAGAT--ACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTA 18951 ||||| | | | | | | ||||| ||| | | | | | || || || | Sbjct 7595 GCCTCGGTCAAGATTTGGTGCACAACCGAGTCTGC--TGGCTTATTCTTGAGGA-GTGTG 7651 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| | ||| ||||| || ||| || ||||| || | ||||| || ||||| Sbjct 7652 AACAATAGACAAGCAAAGTCGGTATGAAGACCCTCATCACGTGAAATCAACTCGTTAGAG 7711 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| | || ||||| || || | ||| || | ||| || || | ||||| ||||| Sbjct 7712 AATGTCAGGCCGGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGCTGCAAAGGATCCT 7771 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || || || ||||| || || || ||||| ||||| || | ||||| | || | || Sbjct 7772 GAGAAAAAGATACCCTCGACAGCAGCAAATGCAACAAGCCGCACTCCAAAGCTTGATTCC 7831 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 ||| ||||| || |||||||| || ||||| || Sbjct 7832 GTATCCGAGATCCACTTGAGTGCCCAGTCGGCCTTTTT 7869 Score = 125 bits (138), Expect = 8e-24 Identities = 236/342 (69%), Gaps = 5/342 (1%) Strand=Plus/Plus Query 19173 TACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAAC 19232 ||||||| || || || |||| || ||||| | | ||||||| | | || || || Sbjct 8034 TACACATACCA--GTATCAATAGCATCAAATAAAAATGTACGCTCCTTCCTGTCCTTGAC 8091 Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| ||| ||||||| |||||| || || || ||||| || ||||| || Sbjct 8092 ATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTTTCAATCATGATCTGGAA 8151 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 ||||| ||| | | ||||| || || || || | |||||| || || | ||| Sbjct 8152 GCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAAAATCGCTCAACAAGATT 8211 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 |||||||| || |||||| || || ||||| || || ||| | |||||| | Sbjct 8212 CTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACACGAGAAATAAAGTAGCG 8271 Query 19413 TTCATCTGAGGTTA-ATG-TATTCCAA-TCATTAATATCTTTAGATAAATCTACTTCTTC 19469 |||||| || | | | | |||| | ||| | | ||||| || | |||||||| || Sbjct 8272 TTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTTGAAAGGTCTACTTCCTC 8331 Query 19470 AACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511 | ||||| |||||||| ||||||||||| ||||||||||| Sbjct 8332 GGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCA 8373 >seq1193 Length=8092 Score = 100 bits (110), Expect = 3e-16 Identities = 297/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 47021 ATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTT 47080 |||||||||||| ||||| | || | ||| || || || ||||| || || | ||| Sbjct 6065 ATAATACATACCTGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTT 6124 Query 47081 AGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACC 47140 | || | || | | ||| ||||| || || || ||||||||||||||||| Sbjct 6125 GGCGTAGTTGATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACC 6184 Query 47141 TCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAAT 47200 | ||||| || | || | ||||||| |||||| || |||||||| ||||| || || Sbjct 6185 ACGGTCAGCAGCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGAT 6244 Query 47201 TTGTTTAATGTCTTCTGGGA-GATTAGTAT--TTTGAATAGATCCTCCgttttc---tat 47254 ||| | || |||| | | | || ||| ||||| ||||| | || Sbjct 6245 GGCTTTGAGTTCGCTAGGGATGCTCTGAATGCCTTGGATAGA---ACCGTTGGCAGAAAT 6301 Query 47255 aattttgtttttta---attcatttgaccaaagttttcgttcagttaatgtttttaaAAG 47311 ||| ||| || | ||||| ||| ||| | || || | || | ||| Sbjct 6302 AATGCGGTTCTTCATGCTGTCATT---CCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAG 6358 Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| |||| ||||| || ||||| ||||| || || | | | |||| || ||| ||| Sbjct 6359 ATGTTGATTGACAATCTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGT 6418 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| || || | || ||||| || || | |||||| | || || ||||| ||||| | Sbjct 6419 ATACGGCTCAAAAGCCTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGG 6478 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTT 47464 ||||| | || || || | || |||||||| Sbjct 6479 AGCAACAAGCAAACTGTTACGAACACCATATTT 6511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562071152763120