Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2011 154 1e-31 seq441 122 7e-22 seq388 102 7e-16 seq274 93.3 3e-13 >seq2011 Length=4578 Score = 154 bits (170), Expect = 1e-31 Identities = 350/521 (67%), Gaps = 4/521 (1%) Strand=Plus/Minus Query 550018 ATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGG 550077 ||| || ||||| || ||||||||||| | ||||| || |||||||| || || || Sbjct 2301 ATACAGATGTGTCGGCGTTTGGCAAAACGACCGTGTTGAGATCATTGCCAACGACCAGGG 2242 Query 550078 TAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGC 550137 ||| | ||||||||||| |||||| |||| | || | || | | | |||||||||| Sbjct 2241 AAACCGCACTACTCCATCATATGTTGGTTTCTCTGACAGCGAGCGTCTCATTGGTGATGC 2182 Query 550138 AGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAAT 550197 || || | || | | | || || ||||| || | ||||| || || ||||| || Sbjct 2181 CGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGACGCCAAGCGTTTGAT 2122 Query 550198 TGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAAT 550257 || | | ||| | ||| | |||||| | || |||||||| ||| | ||| | | Sbjct 2121 CGGTCGTCGATTTGAGGATGCTGAGGTTCAGTCTGACATGAAGCACTGGTCCTTCAAGGT 2062 Query 550258 TGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATT 550317 || || |||||| || || | || | | |||| | | || | || Sbjct 2061 CGTCAACAAGGGTGGAAAGCC-AATCATCCAGGTTGAGTTCAAGGGTGAGACCAAGACTT 2003 Query 550318 T-TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTT 550376 | | || || | |||||||| |||||| | | || ||||| | || ||| |||| Sbjct 2002 TCACCCCCGAGGAGATTTCATCCATGGTTCTCCTTAAGATGAAGGAGACTGCCGAAGCTT 1943 Query 550377 TTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | || || | || | |||||| || | ||||| || || || || || ||||| Sbjct 1942 ACCTCGG-CACCACTGTCAAGGATGCCGTTGTCACTGTCCCCGCTTACTTCAACGACTCC 1884 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || ||||| ||||| || |||||||| ||| |||| || ||||| || ||||| || Sbjct 1883 CAGCGTCAGGCTACCAAGGATGCTGGTGTCATTTCTGGCCTCAATGTCCTCCGTATCATT 1824 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || |||||||| ||||| |||| || || ||||| || Sbjct 1823 AACGAGCCTACTGCAGCTGCCATTGCCTACGGTCTTGACAA 1783 Score = 152 bits (168), Expect = 4e-31 Identities = 537/833 (64%), Gaps = 12/833 (1%) Strand=Plus/Minus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 || |||||| ||||| || || ||| ||| || ||||||||||||| || || Sbjct 1706 GAGGATGGTATCTTTGAGGTCAAGGCCACTGCTGGTGACACTCATCTTGGTGGTGAGGAC 1647 Query 551817 TTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGAT 551876 ||||| || | || || || | ||| || || || ||||| |||| ||| Sbjct 1646 TTTGACAACCGTCTTGTTTCTCACTTCTCTGACGAGTTCAAGCGAAAGTACAAGAAGGAT 1587 Query 551877 CTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGA 551936 || || | || ||||| |||||||| | ||||||||||| | || || || Sbjct 1586 CTTACTTCCAACCCCCGTGCTCTCCGTCGTCTCCGTACTGCTTGCGAGCGTGCAAAGCGC 1527 Query 551937 GCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGAT 551996 |||| ||||||| |||| || | || ||| | || || | || || || |||| Sbjct 1526 ACTCTATCATCTGCCGCTCAGACTTCCATCGAAATCGACTCTCTTTTCGAAGGTGTTGAC 1467 Query 551997 TATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA 552056 | |||| | || | | || || || || | || |||||||||| | | Sbjct 1466 TTCTATACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCGCTGATCTCTTCCGTGGA 1407 Query 552057 ACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACAT 552116 || ||||| || || || | ||| | | || || || ||||| || | || || Sbjct 1406 ACCATTGACCCCGTTGACAAGGTTCTCCGTGACTCTAAAATTGACAAGGGCTCTGTCCAC 1347 Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC- 552175 ||| |||| ||||||||||||||||| | ||||| || |||| | | | | | || Sbjct 1346 GAAGTTGTTCTTGTTGGTGGATCTACCCGTATTCCCAAGATTC---AGAAGCTCATCTCC 1290 Query 552176 --TTATTTCAATGGTAAAAAATTAAATGAAAGT--GTTAATCCAGATGAGGCTGTTGCCT 552231 |||||||| || || | || |||| | || || |||||||||||||| | Sbjct 1289 GACTATTTCAACGGAAAGGAGCCCAA--CAAGTCGATCAACCCCGATGAGGCTGTTGCAT 1232 Query 552232 ATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATA 552291 |||||||||| |||| || || ||||| |||| | || || || || | Sbjct 1231 ATGGTGCCGCCGTTCAGGCTGCCATTCTCACTGGTGATACCTCAGAGAAGACCCAGGA-C 1173 Query 552292 TTGTACTTG-TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 ||| ||| | ||||| | ||||||||||| ||| | || || | ||| ||| | ||| Sbjct 1172 TTGCTTTTGCTCGATGTGGCCCCTCTATCTCTCGGTATCGAGACTGCTGGCGGTGTGATG 1113 Query 552351 ACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACG 552410 || ||| ||| | | || |||||| | || || || ||| || || || || Sbjct 1112 ACCCCTCTCATCAAGCGTAACACTACTGTCCCCACAAAGAAGTCTGAAGTCTTCTCCACC 1053 Query 552411 TATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACT 552470 ||| | || || || | | ||| |||||| | |||||||| || | | || Sbjct 1052 TATGCTGACAACCAGCCCGGTGTGTTAATTCAGGTCTTTGAAGGTGAGCGTACCCGTACC 993 Query 552471 AAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 || || || || || || | ||| | | ||||| ||||| || || ||||| Sbjct 992 AAGGACAACAACTTGCTCGGCAAGTTTGAACTCTCTGGTATCCCTCCCGCCCCCCGTGGT 933 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 || || || ||||||| || || ||| |||||||||| || ||| | || || Sbjct 932 GTCCCCCAGGTTGAAGTGACCTTTGATGTCGATGCCAACGGTATTCTCAACGT 880 >seq441 Length=16304 Score = 122 bits (134), Expect = 7e-22 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 550021 TAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAA 550080 ||| |||||||| |||| | |||||| ||||||||||||||||| || || ||||| Sbjct 2187 TAGCTGTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAACGACCAGGGTAA 2128 Query 550081 CAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGC 550140 | | | ||||| |||||||| | || || || | ||| | | | ||||||||| | || Sbjct 2127 CCGTATCACTCCCTCTTATGTCGCCTTTACCGACAATGAGCGTCTTGTTGGTGATCCTGC 2068 Query 550141 AAAATATCAAGC-CACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTG 550199 ||| | || || | || | || || |||||| || |||||||| || ||| | ||| Sbjct 2067 AAAGAACCAGGCTCCCTCG-AACCCATTCAATACCATCTTTGATGCCAAGCGTCTGGTTG 2009 Query 550200 GAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTG 550259 | | | ||| | || | ||||||||| || ||||| |||||||| || | ||| Sbjct 2008 GTCGCCGATTTGACGACAAGGATGTTCAGGCTGACATGAAACATTGGCCATTTAAGGTTG 1949 Query 550260 TTAA 550263 |||| Sbjct 1948 TTAA 1945 >seq388 Length=17407 Score = 102 bits (112), Expect = 7e-16 Identities = 282/430 (66%), Gaps = 18/430 (4%) Strand=Plus/Plus Query 368583 TGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGA 368642 ||| ||| |||| ||| | ||| | | ||||| ||||||||||| |||||| ||| Sbjct 4016 TGACTGGGGTATCTCACGCAGTCGCTACTGGGGCACTCCAATTCCTATATGGATGAGTGA 4075 Query 368643 TGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTGT 368702 |||| ||||| || ||| ||| |||||| | | || || || |||||||||| Sbjct 4076 TGATATGGAAGAGATGGTTGCTATTGGTTCAGTCCAGGAGCTGATGGATCTATCTGGTGT 4135 Query 368703 GCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAA 368762 || | || || || ||| |||||||||||||| | || ||||| |||| Sbjct 4136 CACTGGCATCACCGACTTGCACCGTGACAAAATTGATCACATCACTATCCCATCCAAGAT 4195 Query 368763 AGGAAAAGG---TTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGG 368819 || ||||| | || | || | | ||| || || ||||||||||| || || Sbjct 4196 GGGGAAAGGCGATCTAAAG---CGTATCCCTGAAGTGTTTGACTGCTGGTTTGAGTCTGG 4252 Query 368820 TTCTATGCCTTATGGTCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGA 368879 ||||| |||| ||| ||||||||| ||||| || ||| || || Sbjct 4253 CAGCATGCCGTATGCCCAACAACATTATCCCTTTGAGAA--CAA-------GGAGAAGTT 4303 Query 368880 TAAAGATTATGT---GGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTT 368936 | | | || | | || || ||| | |||| || |||||||| ||||||||||| Sbjct 4304 TGAGGCTTCTTTCCCCGCAGACTTTATTGCAGAGGGTATCGATCAAACGCGTGGTTGGTT 4363 Query 368937 TTATACCCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAAT 368996 ||||| || || || || | | | || |||||||| || || |||||||| || Sbjct 4364 CTATACGCTGACTGTTCTAGCCGCTCATCTCTTTGATAAACCTGCATTCAAAAATGTCAT 4423 Query 368997 AGTAACTGGT 369006 || | |||| Sbjct 4424 TGTGAATGGT 4433 >seq274 Length=20666 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || ||||| ||||| ||||| ||| ||||| ||||||||||| | ||||| | Sbjct 19203 AGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAAAGAGTACGG 19144 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| || ||||| || ||||| | | ||||| ||||| || ||||| ||| Sbjct 19143 CCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCCCTCT 19084 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 |||||||| || || || || ||||| || || | ||| | | ||| | || Sbjct 19083 TTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTC-GGATGACTCGACTTCCAAGGT 19025 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || ||||| ||||| || || || || ||||||||| Sbjct 19024 GATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCATA 18985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029012644795420