Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1193 118 2e-21 >seq1193 Length=8092 Score = 118 bits (130), Expect = 2e-21 Identities = 543/841 (65%), Gaps = 48/841 (6%) Strand=Plus/Plus Query 212592 AGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAG 212650 ||||| ||||| || ||||| || ||||||| |||||||| | |||||| |||| | || Sbjct 6063 AGATAATACATACCTGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCAT-GCTGGTCAG 6121 Query 212651 TTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACT 212710 ||| || || | | ||| | | ||| ||| | ||||| ||||| Sbjct 6122 TTTG----GCGTAGT-------TGATC----TCGGCCAAATGGATATTCAGTGACTGCGA 6166 Query 212711 CTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTC 212770 || || || |||| | | |||||| || | ||| || ||| | | || |||| || Sbjct 6167 TTGATCAATAAATGCACCACGGTCAGCAGCGAGGTCAATAATAACCTTTTGTGAGATTTC 6226 Query 212771 CCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGA 212830 ||| || || ||| |||| ||||||| || |||| || | ||| || | ||| Sbjct 6227 CCATACAGTTTTGTAGATGGCTTTGAGTTCGCTAGGGATGCTCTGAATGCCTTGGATAGA 6286 Query 212831 CCCCCTGTGTATGGTCAGCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCC--CT-GGTC 212885 || || | | ||| | |||| || |||||||| || || |||| Sbjct 6287 ACCGTTGGCAGAAATAA--TGCGGTTCTTCATGCTGTCATTCCAGAGTCCGAGCTCGGTC 6344 Query 212886 TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTC 212945 || ||||| || || | ||||| |||||||| ||||| || ||||| | ||| Sbjct 6345 ---AGATCCTTGAGAAGATGTTGATTGACAATCTGGAATTCACCAGAAAGCACACGCCTG 6401 Query 212946 TGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTG 213005 || | ||| || || || ||||| | ||| ||||| |||||||| || | || Sbjct 6402 GTATAGATGTTAGATGTATACGGCTCAAAAGCCTCATTGTTGCCCAGAATTTGCGATGTA 6461 Query 213006 CTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG 213065 ||||| ||||| ||||| || || | |||||| | || || | | | || | Sbjct 6462 GACGCTGTTGGCATCGGAGCAACAAGCAAACTGTTACGAACACCATATTTAGCAAT-ATC 6520 Query 213066 CGC-CGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTC-ACGTTCCACA 213123 ||| || || | |||||| | || |||| | | |||| || | ||||| Sbjct 6521 CGCACGCAGGGTTTTCCAGTC---------AAACTGGTC-TGATACTTCCACATCCCACA 6570 Query 213124 TGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCAT 213183 | || ||||||||| || ||||| || || || | ||||| || || || | Sbjct 6571 TATCGGGCTGCAAGATACCCTTGCTGACAGGCGATCCTTCGTAAGTTTCATACGGACCGT 6630 Query 213184 GCTCCTTG-GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATC 213242 ||| || | ||||| || || || || || || | || |||| ||||||||| Sbjct 6631 -CTCTTTTTGAAAGCTCACACGATGCAGTAAGAGCGGCAAAATAAATGGCCTCAAATATC 6689 Query 213243 TCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTG--GAACA 213300 | || || | ||||||||||||||| || || ||||| || || ||| || Sbjct 6690 TGTCTATTTAACTTCTTGGCCTCTGGAGAGTCAAAAGGCATACGCA-GC-TTGATAAATG 6747 Query 213301 CATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA-CTTGGAG 213359 | || || || ||||| || || | ||||||||| | ||| | || || || | | || Sbjct 6748 CGTCTGCTAGGCCCTGAACACCTAGGCCGATGGGACGGTGGCGCATATTTGAGCGTCTAG 6807 Query 213360 CACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT 213419 | || ||||| ||||| | ||| | ||| |||||||| || || |||||||| ||| Sbjct 6808 C-CTGCTCCACAGGGTAGTAATTGATATTGATAATCTTGTTAAGATTACGGGTGGCAACT 6866 Query 213420 T 213420 | Sbjct 6867 T 6867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931470410590720