Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3174 116 2e-20 seq274 114 8e-20 >seq3174 Length=2562 Score = 116 bits (128), Expect = 2e-20 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||||||||| || ||||| || || ||||| || |||||||||||| Sbjct 1829 TCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTG 1770 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| |||||| ||||||||||||| | | | |||||||| || Sbjct 1769 TCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTA-CCTCAAGGGTGAT 1711 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| ||||| Sbjct 1710 GGTCTTGCCAGTCAGGGTCTTGACGAATATTTG 1678 >seq274 Length=20666 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| ||||| ||||| ||| ||||| | ||| ||||| | ||||| Sbjct 19207 ACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAAAGAGT 19148 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||||||||| ||||| | ||| || || ||||| || ||||| Sbjct 19147 ACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCC 19088 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 || || ||||| ||||| |||||| ||||| || || | || | | || ||| Sbjct 19087 CTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACTTCCAA 19028 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || ||||| || || ||||| || || ||||| Sbjct 19027 -GGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTG 18989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267949369382984