Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1370 140 4e-28 seq296 113 5e-20 seq197 102 1e-16 seq624 91.5 2e-13 seq1193 84.2 3e-11 >seq1370 Length=7093 Score = 140 bits (154), Expect = 4e-28 Identities = 250/365 (68%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||||| | ||||| ||||| || ||| | || ||| | Sbjct 5507 CCTCAGCACATGCTGATGCGTGTCGCTGTTGGCATTCACGGTGATGACGTCGAAGCTGCC 5566 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| | |||||| || | |||| |||||| |||| || ||||| Sbjct 5567 ATTGAGACTTACAATCTCATGTCCGAAAAGTTTTTCACCCACGCATCACCCACGCTCTTT 5626 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 ||||||||||| || || || ||||| ||||| ||| | || ||| |||| || Sbjct 5627 AATGCTGGTACCCCTCATCCACAAATGTCTAGTTGTTTCTTGCTCACCATTGAGGATGAT 5686 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || | || ||||| || || | | ||||| ||||||||| ||||| Sbjct 5687 TCCATTGAAGGCATCTACTCTACCCTAAAGACATGTGCCATGATCTCAAAGACTGCTGGT 5746 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 |||||||| | |||| || | | || | | || |||| || |||||| Sbjct 5747 GGTATTGGCTTAAACATTCACAAGATCAGGTCTTCTGGTTCATATATTGCTGGAACAAAT 5806 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 |||| ||| |||| |||||||||||||| ||||| |||||| ||| || || ||||| Sbjct 5807 GGTCTATCCAATGGCATTATTCCAATGCTACGCGTCTTTAACAACACTGCCCGATATGTG 5866 Query 75572 AATCA 75576 |||| Sbjct 5867 GATCA 5871 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| || ||||| ||||||||||||||||| || || || ||||| || Sbjct 6531 GAGACTGGTACCCCATACATGCTTTACAAGGATGCATGCAATCGCAAATCCAACCAGCAG 6590 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || | || || |||||| || ||| | ||||| |||||| | || ||| | | | Sbjct 6591 AACCTTGGGACCATCAAGTGCAGCAATTTATGCACAGAAATTGTTGAATACTCGTCTCCG 6650 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATC 76053 |||||| ||||||||| ||| |||| || Sbjct 6651 GATGAGGTGGCTGTTTGTAATCTGGCCTC 6679 >seq296 Length=20057 Score = 113 bits (124), Expect = 5e-20 Identities = 215/311 (69%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 13552 CGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAA---AGTG 13608 ||||||| | || || || || || ||||| || || || | ||| |||| | || Sbjct 13476 CGGTATTACTAAATTAGACGATGCCAACAATGCTGGAACT-CGGAAT--GGAAGCAAATG 13420 Query 13609 TACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGT 13668 || | ||| |||| || ||||| || || || |||| |||||| | || || || || Sbjct 13419 CACATTAATTCTCACTGAAGGTGACTCTGCCAAGTCCCTTGCGGTTTCTGGCCTTTCAGT 13360 Query 13669 CGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGA 13728 |||||||||||| ||| |||||||| || |||||||| || | ||||| || || Sbjct 13359 CGTTGGTCGTGACAACTTTGGTGTGTTTCCTCTTCGCGGAAAGCTTCTTAATGTCCGTGA 13300 Query 13729 CGCTTCGGTGGCACAGCTCACA-TCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTG 13787 ||| | | ||| | ||| ||| || ||| | |||| ||||| | || || | Sbjct 13299 GGCTACACATTCTCAGATTACAGGCAATGCA-GAGATTAACGCCATCAAGCAAATTCTGG 13241 Query 13788 GTCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGA 13847 | || ||||| ||||||| ||| | |||| ||| ||| || ||||| | | | |||| Sbjct 13240 GACTGCAACATGGAAAAGTCTATGATGATGCTTCGTCACTGCGATATGGACATTTAATGA 13181 Query 13848 TTATGACAGAT 13858 | ||||| ||| Sbjct 13180 TCATGACGGAT 13170 >seq197 Length=23843 Score = 102 bits (112), Expect = 1e-16 Identities = 334/510 (65%), Gaps = 17/510 (3%) Strand=Plus/Minus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTT 175245 |||| ||||| | || || |||| ||||| || ||| || ||| |||| | ||| Sbjct 13078 TTCAAGGATGTCGCTGGAATGGACGAGGCCAAGGAAGAAATTATGGAGTTTGTCAAGTTT 13019 Query 175246 CTCAAGCAACCCGAGAGATATTTTGGAAGT-GGTGCCAAGATCCCCCGAGGCGCCCTTCT 175304 |||||| | |||||| ||| | || | ||||| || |||||| ||||||| | || Sbjct 13018 CTCAAGAATCCCGAGCACTATGA-GAAACTAGGTGCAAAAATCCCCAAAGGCGCCGTACT 12960 Query 175305 CGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAA 175364 | | || || || || ||||| || || || ||| || | || || || | Sbjct 12959 CTCCGGACCTCCTGGAACAGGAAAAACACTTCTTGCCAAGGCAACTGCTGGCGAGGCGGG 12900 Query 175365 TGTCCCATTCATCCAGTGC-TCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTG 175423 || || ||| || || | |||| || | ||| | ||||||||||| ||||| ||| Sbjct 12899 CGTTCCCTTCTTC-AGCGTATCTGGTTCAGAGTTTATTGAGATGTTTGTCGGTGTCGGTT 12841 Query 175424 CCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCA 175483 | | || || |||||||||| || |||| | ||| || || ||| | |||| Sbjct 12840 CTTCGCGAGTGCGTGATCTCTTTGCAAGCGCCAAAAAGAATGCTCCGTGCATTATTTTCA 12781 Query 175484 TTGATGAGATTGATGCGGTGGGCAAGCAACG--CAGCGCTGGTGGT---ATGCCAGCAAA 175538 ||||||| ||||| || | |||||| || || | || ||| ||| | ||| Sbjct 12780 TTGATGAAATTGACGCCATAGGCAAGGCTCGATCAAAG--GGAGGTCAGATGGGTGGAAA 12723 Query 175539 TGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAA 175595 || || | ||| || |||| ||||| || || ||||| || ||||| ||| Sbjct 12722 CGATGAACGTGAAAGCACCCTTAACCAACTTCTTGTAGAAATGGACGGATTTGACTCCAA 12663 Query 175596 TGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCT 175655 || || |||| || |||||| ||||| || ||| | || || || | Sbjct 12662 CGAACATG---TTGTAGTGCTTGCGGGAACTAACCGACCCGATGTGCTGGACCCGGCTTT 12606 Query 175656 CCTTCGCCCGGGTCGTTTTGATCGCAAGAT 175685 |||||||| ||||| ||||||||| |||| Sbjct 12605 ACTTCGCCCTGGTCGATTTGATCGCCAGAT 12576 >seq624 Length=13322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTA 65137 ||| ||| |||| ||||| ||| ||||||||||| ||||| || || || ||| || | Sbjct 7813 GCGGCTTGTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGGATCCTT-TGCAGCCA 7755 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | |||| | ||||| || ||||| ||||| ||||| ||||| || || | |||| Sbjct 7754 TCTTTTGGCTCAAGAAACGTGGTCTTATGCCCGGCCTGACATTCTCTAACGAGTTGATTT 7695 Query 65198 CCCGAGATGAGGGTCTCCA 65216 | || ||||||||||| || Sbjct 7694 CACGTGATGAGGGTCTTCA 7676 >seq1193 Length=8092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| || ||||| ||||||||||||||||| || || || ||||| || Sbjct 7289 GAGACTGGTACCCCATACATGCTTTACAAGGATGCATGCAATCGCAAATCCAACCAGCAG 7230 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || | ||||| ||||| || ||| | ||||| || ||| | || ||| | | | Sbjct 7229 AACCTTGGAACCATCAAATGCAGCAATTTATGCACAGAGATTGTTGAATACTCGTCTCCG 7170 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATC 76053 |||||| ||||||||| |||||||| || Sbjct 7169 GATGAGGTGGCTGTTTGTAATTTGGCCTC 7141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529644751040