Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3174 89.7 1e-12 seq274 87.8 4e-12 >seq3174 Length=2562 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || || | ||| || ||||||||||| | | ||| || |||||||| |||||||| || Sbjct 1829 TCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTG 1770 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || || || ||||| |||| ||| || || ||||| || || || ||| Sbjct 1769 TCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCAAGGGTGATG 1710 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || ||||| | || || | ||||| |||||| || Sbjct 1709 GTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATTGTA 1671 >seq274 Length=20666 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGA---CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAAT 192364 ||||||||| | || || | || | || | ||||| |||||| |||||| |||| Sbjct 19217 TACCACCTCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAAT 19158 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | || | || || |||| || | || || ||||| || || || | ||| || |||| Sbjct 19157 CCGAAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAG 19098 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || ||||| ||||||||||| || || || |||||| || | || || || | Sbjct 19097 GGGGGATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACT 19038 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| | || || || ||||| || | || || | ||| || ||||| Sbjct 19037 CGACTTCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984412416063300