Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3174 102 1e-16 seq274 89.7 9e-13 >seq3174 Length=2562 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || |||||||| || | | ||| ||||||||||| |||||||| | Sbjct 1831 CGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCCT 1772 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || ||||| |||||||| || || ||||| || || || | Sbjct 1771 TGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCAAGGGTGA 1712 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 |||| || ||||| | || || | |||||| |||||| || Sbjct 1711 TGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATTGTA 1671 >seq274 Length=20666 Score = 89.7 bits (98), Expect = 9e-13 Identities = 168/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| | ||| || ||| || | ||| || | || | || | ||||| |||||| Sbjct 19231 CTTCTTACGCTTCTTACCACCTCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTT 19172 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||||| ||||| || | || || | || || | || || ||||| ||||| || Sbjct 19171 CTGGATATTGTAATCCGAAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAA 19112 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 | ||| |||||||| || ||||| ||||||||||| || || || |||||| || Sbjct 19111 ACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAAT 19052 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 || || || || || ||||| | || || || ||||| || | || || | || || Sbjct 19051 GGTGTCGGATGACTCGACTTCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGAT 18992 Query 172064 CTGCAT 172069 ||||| Sbjct 18991 TTGCAT 18986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905075378516400