Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1370 159 1e-33 seq72 145 2e-29 seq751 122 3e-22 seq1193 116 1e-20 seq197 107 6e-18 >seq1370 Length=7093 Score = 159 bits (176), Expect = 1e-33 Identities = 336/495 (68%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCC 156068 ||||||| || |||||| | |||||| |||||| ||| || ||| ||||||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||| ||||| || ||||| || || ||||| | |||||| |||||||| |||||||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 ||||| ||||| ||||| |||||||| || | | || ||||| | || ||| Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 |||||||| | || || || || ||| ||||| ||| | | || |||||| Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 156249 ATAGAATCATCTTCCATTGATAG-TAGATAGCACGA-ACTTAATTGAGGTCGTGGTGTTC 156306 || |||||||| || || | || ||| | || | || | ||| || | || || | Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGAC--ATTTGTGGATGAGGGGTAC 5634 Query 156307 CAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATG 156366 |||| || || || || |||| ||| || | ||| |||| | ||||| || ||| | Sbjct 5633 CAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAG 5574 Query 156367 TCTCCTT--AATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACAT 156424 |||| | | || || | | | |||||||| | | || ||| | |||| ||| Sbjct 5573 TCTCAATGGCAGCT--TCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAGCAT 5516 Query 156425 ATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGT 156484 |||||||||||||| || | | | || ||||| || || | ||| || ||||| Sbjct 5515 GTGCTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGT 5456 Query 156485 TTTAAACCCGAAATA 156499 || || || || || Sbjct 5455 CTTGAAGCCAAAGTA 5441 >seq72 Length=34138 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || | || |||||||| |||||| | || || ||||| ||| || Sbjct 23474 ACAGACATGCACACGATATGCATCAGAGGCGTCAAAGAGTCGCTCCTTGAGGAAATTAGC 23533 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| ||||||||||| || ||||||||||| || || |||||||||||||||||||| Sbjct 23534 TGCACCATGTGAAATCATGCAGTCACGCTCCATCTCTCCAAAACGAAGACCACCATCGCG 23593 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | | ||||| | ||||| || |||||| | | || || | || || || Sbjct 23594 TGAACGTCCCTCAACCGGCTGTCGGGTGAGAATTTGAACTGGCCCACGTGCACGACTGTG 23653 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 |||||||| |||||| |||||||||||||||||| | | ||| || Sbjct 23654 GATCTTATCATCTACCATGTGCTTGAGACGCTGGTAGTAAGTGGGGCC 23701 >seq751 Length=11703 Score = 122 bits (134), Expect = 3e-22 Identities = 202/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| ||||| |||||| | ||||| ||||| |||||||| || Sbjct 8363 CTTGACAAGACGACGCTGGATATACCCAGTTTCGGCCGTTTTGACAGCGGTATCAATGAG 8304 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||| ||||||||||||||||| || | |||| |||| || || | || | Sbjct 8303 ACCTTCACGGCCACCCATAGCATGGAAAAAGAATTCTTGCGGTGTAAGGCCTCGAAGGTA 8244 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCA 302761 ||| | || || || ||||| | || || || | ||| | | | ||||| || || | Sbjct 8243 AGAGTTTTCCACAAATCCACGAGATTCAGGTGAGTGGTC-ATCGCGAGTAAAATGAGGAA 8185 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || | | || | || ||||| ||||| || ||||| || ||||| | | Sbjct 8184 GAGTACGATCCTTAAAACCAAACGGAATACGTTTTCCTTCGACGTTTTGTTGTCCGACAC 8125 Query 302822 ACGAAATCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 | | |||| || |||||||| ||| | | |||||||| |||| Sbjct 8124 AAGCTGTCATTTGTGAAATATT--AATGAAAGATCCCTTGGATCCAG 8080 >seq1193 Length=8092 Score = 116 bits (128), Expect = 1e-20 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCC 156068 ||||||| || |||||| | |||||| |||||| ||| || ||| ||||||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||| ||||| || ||||| || || ||||| | |||||| |||||||| |||||||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 ||||| ||||| ||||| |||||||| || | | || ||||| | || ||| Sbjct 7999 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 8058 Query 156189 ATACCACC 156196 ||||| || Sbjct 8059 ATACCGCC 8066 >seq197 Length=23843 Score = 107 bits (118), Expect = 6e-18 Identities = 323/495 (65%), Gaps = 9/495 (2%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| ||| ||| || ||||| | | ||||| || ||| ||| | || Sbjct 12584 ATCAAATCGACCAGGGCGAAGTAAAGCCGGGTCCAGCACATCGGGTCGGTTAGTTCCCGC 12643 Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 | || |||| | |||| | | |||||| ||||| | | || ||| ||||| Sbjct 12644 AAGCACTACAACATGTTCGTTGGAGTCAAATCCGTCCATTTCTACAAGAAGTTGGTTAAG 12703 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGA--ATCGCTCCtttttttA 289029 || ||| | |||||| ||| ||| | | | ||| |||| |||| Sbjct 12704 GGTGCTTTCACGTTCATCGTTTCCACCCATCTGACCTCCCTTTGATCGAGCCTTG----- 12758 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || | || |||||||| ||||||||||| | ||||||| ||| | | | || ||||| Sbjct 12759 CCTATGGCGTCAATTTCATCAATGAAAATAATGCACGGAGCATTCTTTTTGGCGCTTGCA 12818 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | || || || | || | ||| ||| |||| || | ||| || ||| | Sbjct 12819 AAGAGATCACGCACTCGCGAAGAACCGACACCGACAAACATCTCAATAAACTCTGAACCA 12878 Query 289150 GATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||||| |||| ||| | || || ||||| || |||| | || |||||||| || Sbjct 12879 GATACGCTGAA-GAAGGGAACGCCCGCCTCGCCAGCAGTTGCCTTGGCAAGAAGTGTTTT 12937 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||||||||| ||||| | || | || || || | |||||| || || Sbjct 12938 TCCTGTTCCAGGAGGTCCGGAGAGTACGGCGCCTTTGGGGATTTTTGCACCTAGTTTCTC 12997 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||| | ||| || |||| | ||| | |||| ||| || ||| | || ||||| || Sbjct 12998 ATAGTGCTCGGGATTCTTGAGAAACTTGACAAACTCCATAATTTCTTCCTTGGCCTCGTC 13057 Query 289329 ACATCCTGCTACATC 289343 ||| || ||||| Sbjct 13058 CATTCCAGCGACATC 13072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471716560641646