Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq274 91.5 1e-13 seq1370 87.8 2e-12 >seq274 Length=20666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || ||||| || || || | ||||| || | || Sbjct 18986 ATGCAAATCTTTGTCAAGACCCTTACGGGTAAGACAATCACCTTGGAAGTCGAGTCATCC 19045 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| ||||| || || || || Sbjct 19046 GACACCATTGATAATGTCAAGGCCAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCAG 19105 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || || || || ||||| |||||| | | | || ||||| || Sbjct 19106 CAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTTCGGATTACAAT 19165 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || || || || || || ||| | || | || | || ||||| || Sbjct 19166 ATCCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGCCTTCGTGGAGGTGG 19215 >seq1370 Length=7093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGACAATTTCGG 139138 || |||||| | || || || ||||| || || || | || |||||| |||||||| | Sbjct 6683 AAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGA-GTATTCAACAATTTCTG 6625 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 || ||||| || |||||||| || || | || || || ||| ||| || || || | Sbjct 6624 TGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATTTGCGATTGCATG 6565 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTT 139237 |||| ||||||||||| || || || ||||| | ||||| Sbjct 6564 CATCCTTGTAAAGCATGTATGGGGTACCAGTCT-CACTT 6527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449867468108240