Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3174 102 8e-17 seq274 96.9 3e-15 >seq3174 Length=2562 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||| ||||| || || | ||||| ||||||||||| || ||||| |||||||| Sbjct 1830 GTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCCTT 1771 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | |||| || || | | ||| || || | ||||| Sbjct 1770 GTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCAAGGGTGAT 1711 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || ||||| || ||||| Sbjct 1710 GGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCAT 1675 >seq274 Length=20666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||||||||| ||||||||||| | | | | ||| ||||| |||||||| | Sbjct 19182 GTAGACTCTTTCTGGATATTGTAATC--CGAAAGAGTACGGCCATCCTCAAGCTGCTTTC 19125 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || ||||| || || || || |||||| || Sbjct 19124 CAGCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTGGATCTTGGCCT 19065 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| | ||| || || | ||||| || || || || || | Sbjct 19064 TGACATTATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATTGTCTTACCCGTAAGGG 19005 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 19004 TCTTGACAAAGATTTGCAT 18986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483388422891920