Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1447 91.5 1e-13 seq274 86.0 6e-12 >seq1447 Length=6688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || ||||| || || || ||||| || ||||||||||| | Sbjct 2183 CCTCCACGGAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAA 2242 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||| || ||||||| ||||||||| || || || Sbjct 2243 AGAGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGG 2302 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || ||||| || ||||| ||| | ||||| || || || || Sbjct 2303 ATTCCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGGACTCGACC 2362 Query 134667 TCG-AGAGTAAT 134677 | | ||||| || Sbjct 2363 TAGAAGAGTTAT 2374 >seq274 Length=20666 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || ||||| || || || || || || || ||||| || | Sbjct 19212 CCTCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAA 19153 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| || || || ||||||||||||||||| || || || Sbjct 19152 AGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGG 19093 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| || || ||||| || | |||||||| || || || Sbjct 19092 ATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACT 19033 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || ||||| || | || || || || |||||||| Sbjct 19032 TCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505364550942160