Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1370 248 1e-60 seq624 179 5e-40 seq1193 114 2e-20 >seq1370 Length=7093 Score = 248 bits (274), Expect = 1e-60 Identities = 491/721 (68%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||||| |||||||| || | ||| || || | | || || || ||||| || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||| | |||| ||||||||| ||| |||| | ||||| |||||||| ||||| ||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 |||||||||||||| |||||| || | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || | || ||||| | ||||| || | || || || || || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 ||| |||||| ||| | || | ||||| ||||||||||| |||| || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 |||||||| | || || |||||||| ||||| | ||||| || | |||||||| || Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 70057 TCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||||| || | ||| | || ||| | ||||| || | ||||||||||||| ||| || Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 |||||| || || | ||||| || || || ||| || || || ||||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 70176 AAACCCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTA 70233 || ||||| |||||||| ||||| |||| || || ||||| | ||||| || Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 70234 TCCTTATATTTGGTAACTAT---ATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTA 70290 ||| || || | || || ||||| || ||||| || ||||| |||| Sbjct 5394 TCCGAATGTT---TCACGATGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTG 5338 Query 70291 CCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttttt 70350 || || ||||| | || || |||||||||| ||| ||| || |||| ||| Sbjct 5337 TTGTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTT 5278 Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410 ||||||||||| || || || ||||| || | || || || ||||||||||| || ||| Sbjct 5277 GTTTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGT 5218 Query 70411 T 70411 | Sbjct 5217 T 5217 >seq624 Length=13322 Score = 179 bits (198), Expect = 5e-40 Identities = 350/514 (68%), Gaps = 5/514 (1%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || || | || || || || || || || || || ||||| || |||||||||| Sbjct 7357 CATTACACCACTCTTCTGATACTCGCCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCTTG 7416 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || ||| |||||||||||||||| ||||| | ||| ||| | || Sbjct 7417 CAGAGAGATAATTTCCATGAAATCAAATGGATTCTCAACGCCGTATGCTTTGGGGAGCCC 7476 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | ||| ||| | | || |||||||| || || ||| | ||||| | | ||| Sbjct 7477 GAGTTCCAAAAAGAGACGGTCAGCAACAAACTCAATATATCTCTTCATGAGATTGGCATT 7536 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || || ||| |||||| || ||||| || || ||||| | ||| || | || || Sbjct 7537 CATGCCAATCAGTGCAACTGGGAGCGCCTCGGTCAGGAACTCCTGTTCAATAGCAACTGC 7596 Query 39553 CTCTGTTATTATC-GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACA 39611 ||| || | || | || || ||| || || || | | || | |||| Sbjct 7597 CTCGGTCAAGATTTGGTGC-ACAACCGAGTCTGCTGGCTTATTCTTGAGGAGTGTGAACA 7655 Query 39612 TTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 || || || ||||| ||| || |||||||| | ||| || |||||||| |||| Sbjct 7656 ATAGACAAGCAAAGTCGGTATGAAGACCCTCATCACGTGAAATCAACTCGTTAGAGAATG 7715 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731 | || || ||||| |||||||| || ||||||||||| ||||| ||||| ||||| || | Sbjct 7716 TCAGGCCGGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGCTGCAAAGGATCCTGAGA 7775 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT 39791 | ||||| || || || || |||||||||||||| | | |||| | |||| || ||| Sbjct 7776 AAAAGATACCCTCGACAGCAGCAAATGCAACAAGCCGCACTCCAAAGCTTGATTCCGTAT 7835 Query 39792 ---GTATCCACTTCTGTGCCCAATCAGCTTTCTT 39822 |||||||| ||||||| || || || || Sbjct 7836 CCGAGATCCACTTGAGTGCCCAGTCGGCCTTTTT 7869 Score = 145 bits (160), Expect = 1e-29 Identities = 232/330 (70%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTT-TCATCACTATCTTTAACATATGTATCTAT 39897 || || ||||||| ||| | | ||||| || | || || || ||||||||||| || Sbjct 8045 GTATCAATAGCATCAAATAAA-AATGTACGCTCCTTCCTGTCCTTGACATATGTATCAAT 8103 Query 39898 TAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 || || ||||| || ||||||||||||||| ||||| || ||||| ||| | Sbjct 8104 CAATAGCGAGTACATCTCACTGTGGATGTTTTCAATCATGATCTGGAAGCCGTAGAAATA 8163 Query 39958 TCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 | ||||| |||||| || ||| | |||||| || | | ||| ||||| || || Sbjct 8164 GCGAGCTTCGAAAATTTGAACATCTTGAGAAAATCGCTCAACAAGATTCTCATTAACAAT 8223 Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT 40077 |||||| || || ||||| ||||| ||| | |||||| || |||||| || Sbjct 8224 GCCATCAGAGGCAGCGAAAAAGGCCAACACACGAGAAATAAAGTAGCGTTCATCATCAGT 8283 Query 40078 CA---ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 | | | ||||||| || | |||||||| | |||||||| || || ||||| || Sbjct 8284 AAGACGCTCTTCCCAGTCAATGGTGTCTTTTGAAAGGTCTACTTCCTCGGCAGTCCAGAA 8343 Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 || || ||||| ||||||||||||||||| Sbjct 8344 AGAAGCTTCTGCTTTTTTGTACATGTTCCA 8373 >seq1193 Length=8092 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||||| |||||||| || | ||| || || | | || || || ||||| || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||| | |||| ||||||||| ||| |||| | ||||| |||||||| ||||| ||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 69817 TTACCATTTGTTCCAGAAATATA 69839 |||||||||||||| |||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686862794283120