Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1370 154 2e-32 seq296 113 6e-20 seq197 105 8e-18 seq1193 84.2 3e-11 seq624 84.2 3e-11 >seq1370 Length=7093 Score = 154 bits (170), Expect = 2e-32 Identities = 291/428 (68%), Gaps = 9/428 (2%) Strand=Plus/Minus Query 111662 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 111715 ||||| |||||||||||||||| ||| | || | || || | | ||| ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACC---TGGCCGCTTATTGCCA 5875 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 | |||| ||||| || || ||| |||||| ||||| |||||||||||||| |||| Sbjct 5874 CCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTG 5815 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 111835 ||| |||||||||| || |||| || | | || | | || |||| | Sbjct 5814 GATAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAG 5755 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 |||||||| ||||| ||||||||| ||||| | | || || ||||| || Sbjct 5754 CCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCT 5695 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || || || |||| ||| || | ||| ||||| ||||| || || || ||| Sbjct 5694 TCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTA 5635 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 |||||||| ||||| || |||| |||||| |||| | || |||||| | ||| Sbjct 5634 CCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAA 5575 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | | ||| || | ||| || ||||| ||||| | ||||| ||||| | |||| Sbjct 5574 GTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAGCATG 5515 Query 112076 TACTGTGG 112083 | ||| || Sbjct 5514 TGCTGAGG 5507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || |||| ||| ||||||||| ||||||| | | ||| || | ||||||||| ||| Sbjct 6679 GAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATTCAACAATTTCTGTGCAT 6620 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 || ||| | ||| || ||||| | |||| ||||| || ||||| |||||| Sbjct 6619 AAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATTTGCGATTGCATGCATCC 6560 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||| |||||||| || || || ||||| Sbjct 6559 TTGTAAAGCATGTATGGGGTACCAGTCTC 6531 >seq296 Length=20057 Score = 113 bits (124), Expect = 6e-20 Identities = 215/311 (69%), Gaps = 8/311 (3%) Strand=Plus/Plus Query 182549 ATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCC 182608 ||| ||||| ||||| | | | ||||| || ||| ||| |||| | ||| ||||||| Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 182609 TTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTTTGA-TGTAAGCTGTG 182667 ||||| || || || || | ||||| | || | ||| || ||| ||||| ||| | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTC-TGCATTGCCTGTAATCTGAG 13288 Query 182668 CCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGAT 182727 | ||| || || ||||| | || |||||||| || |||||||| ||| | Sbjct 13289 AATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGT 13348 Query 182728 CACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGA 182787 ||||||||||||| || || || | |||||| |||| || || || ||||| || |||| Sbjct 13349 CACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTGGCAGAGTCACCTTCAGTGA 13408 Query 182788 CAATGAGAGTACACT---TTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACT 182844 ||| | || || | |||| ||| | || || || ||||| || || || || | Sbjct 13409 GAATTAATGTGCATTTGCTTCC--ATTCCG-AGTTCCAGCATTGTTGGCATCGTCTAATT 13465 Query 182845 TGGGAATACCG 182855 | | ||||||| Sbjct 13466 TAGTAATACCG 13476 >seq197 Length=23843 Score = 105 bits (116), Expect = 8e-18 Identities = 335/510 (66%), Gaps = 17/510 (3%) Strand=Plus/Plus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 |||| ||||||||| ||||| |||||||| | || || || | ||| || ||| Sbjct 12576 ATCTGGCGATCAAATCGACCAGGGCGAAGTAAAGCCGGGTCCAGCACATCGGGTCGGTTA 12635 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGT 11560 || |||||| || |||| || || ||| ||||| || ||||| || || Sbjct 12636 GTTCCCGCAAGCACTACAA---CATGTTCGTTGGAGTCAAATCCGTCCATTTCTACAAGA 12692 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT---ACCACCAGCACTG--C 11615 | ||| |||| || ||| | ||||| ||| | ||| ||| || | || | Sbjct 12693 AGTTGGTTAAGGGTGCTTTCACGTTCATCGTTTCCACCCATCTGACCTCC--CTTTGATC 12750 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 | |||||| | || ||||| ||||||||||| | ||| || || ||| | || Sbjct 12751 GAGCCTTGCCTATGGCGTCAATTTCATCAATGAAAATAATGCACGGAGCATTCTTTTTGG 12810 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 || || |||||||||| || || | | ||| ||||| ||||||||||| | ||| | Sbjct 12811 CGCTTGCAAAGAGATCACGCACTCGCGAAGAACCGACACCGACAAACATCTCAATAAACT 12870 Query 11736 TTGCGGCAGA-GCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGG 11794 || |||| | || || ||| || || | || || || | || ||| || Sbjct 12871 CTGAACCAGATACGCT-GAAGAAGGGAACGCCCGCCTCGCCAGCAGTTGCCTTGGCAAGA 12929 Query 11795 AGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC- 11853 || || ||||| || || || || | ||| | ||||||| |||||| || ||||| Sbjct 12930 AGTGTTTTTCCTGTTCCAGGAGGTCCGGAGAGTACGGCGCCTTTGGGGATTTTTGCACCT 12989 Query 11854 ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTT 11913 | || | ||| |||||| | ||||||||| | |||| ||| || ||| || || Sbjct 12990 AGTTTC-TCATAGTGCTCGGGATTCTTGAGAAACTTGACAAACTCCATAATTTCTTCCTT 13048 Query 11914 GGCCGCGTCAATCCCCTCAACATCACTGAA 11943 |||| |||| || || | ||||| |||| Sbjct 13049 GGCCTCGTCCATTCCAGCGACATCCTTGAA 13078 >seq1193 Length=8092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/137 (74%), Gaps = 9/137 (7%) Strand=Plus/Plus Query 111662 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 111715 ||||| |||||||||||||||| ||| | || | || || | | ||| ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACC---TGGCCGCTTATTGCCA 7935 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 | |||| ||||| || || ||| |||||| ||||| |||||||||||||| |||| Sbjct 7936 CCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTG 7995 Query 111776 GATTGACCATTTGTCCC 111792 ||| |||||||||| || Sbjct 7996 GATAGACCATTTGTTCC 8012 >seq624 Length=13322 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||||||||| || ||||| | || || ||||| || || ||||| ||||| Sbjct 7676 TGAAGACCCTCATCACGTGAAATCAACTCGTTAGAGAATGTCAGGCCGGGCATAAGACCA 7735 Query 122731 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||| | |||| | || || ||| || || || ||||| ||||||||||| ||| Sbjct 7736 CGTTTCTTGAGCCAAAAGATGGCTGCA-AAGGATCCTGAGAAAAAGATACCCTCGACAGC 7794 Query 122790 CGCAAACGCAAAAAGGCG 122807 ||||| |||| ||| || Sbjct 7795 AGCAAATGCAACAAGCCG 7812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627989937556800