Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1370 116 5e-21 seq296 95.1 1e-14 seq197 82.4 9e-11 >seq1370 Length=7093 Score = 116 bits (128), Expect = 5e-21 Identities = 244/364 (67%), Gaps = 0/364 (0%) Strand=Plus/Minus Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 ||| |||| | ||||| | |||||| |||||| || || ||||||||||| || ||| Sbjct 5877 CCACCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCA 5818 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | |||| | |||||||| || |||| || | | |||| | ||| |||| Sbjct 5817 TTGGATAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTT 5758 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 | |||||||| || || ||||||||| || || | | || | |||||| Sbjct 5757 AAGCCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATG 5698 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || || ||| ||| | | | || | ||| || || |||||||| || || Sbjct 5697 CCTTCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGG 5638 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCG 119486 |||||||| || ||||| || |||| |||||| |||| | || |||||| | | Sbjct 5637 GTACCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTG 5578 Query 119487 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 119546 || ||||| | | | || | ||| || |||||||| || | | ||| ||||| | | Sbjct 5577 TAAGTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAGC 5518 Query 119547 ATGT 119550 |||| Sbjct 5517 ATGT 5514 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || ||||||||||| |||| ||||||| | | ||| || | |||||| ||||| Sbjct 6679 GAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATTCAACAATTTCTGTGCAT 6620 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATC 118834 || || | ||| ||||| || | ||||| || || || |||| | || || ||||| Sbjct 6619 AAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGA-TTTGCGATTGCATGCATC 6561 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 |||||||||||||||||| || || ||||| |||| || Sbjct 6560 CTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGA 6522 >seq296 Length=20057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/309 (67%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTACC 179867 ||||||||| ||||| | | ||||| || || ||| |||| | ||| | || || Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 179868 TTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGC 179927 ||||| || |||| || | ||||| | || | |||| || ||| | || | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTCTGCATTGCCTGTAATCTGAGA 13289 Query 179928 CACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATC 179987 || ||| || |||||||| | ||| || || ||||| |||||||| ||| || Sbjct 13290 ATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGTC 13349 Query 179988 ACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCAC 180047 ||||||||| || || || |||| ||| || |||| ||| || || ||||| || || | Sbjct 13350 ACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTGGCAGAGTCACCTTCAGTGAG 13409 Query 180048 GATGAGCGTACACT---TTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTT 180104 || | || || | |||| ||| | || || || ||||| || ||||| || || Sbjct 13410 AATTAATGTGCATTTGCTTCC--ATTCCG-AGTTCCAGCATTGTTGGCATCGTCTAATTT 13466 Query 180105 GGGAATACC 180113 | |||||| Sbjct 13467 AGTAATACC 13475 >seq197 Length=23843 Score = 82.4 bits (90), Expect = 9e-11 Identities = 201/297 (68%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 14057 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 14116 |||| |||||||| ||||| ||||| || | || ||| || | ||| ||||| Sbjct 12576 ATCTGGCGATCAAATCGACCAGGGCGAAGTAAAGCCGGGTCCAGCACATCGGGTCGGTTA 12635 Query 14117 GTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAG 14173 || |||| | || || | | || ||||| ||||| || ||||| || |||| Sbjct 12636 GTTCCCGCAAGCACTACAA--CATGT-TCGTTGGAGTCAAATCCGTCCATTTCTA-CAAG 12691 Query 14174 A-GTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACC-CGCACTG--CG 14229 | |||| || | ||| ||| |||||||| || || ||| ||| | | || || Sbjct 12692 AAGTTGGTTAAGGGTGCTTTCACGTTCATCGTTTCCACCCATCTGACCTCCCTTTGATCG 12751 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| || | ||||||||||||||| ||||||| || || || ||| | ||| Sbjct 12752 AGCCTTGCCTATGGCGTCAATTTCATCAATGAAAATAATGCACGGAGCATTCTTTTTGGC 12811 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | |||||| ||| ||||||| | | ||||||||| ||||||||||| | ||| Sbjct 12812 GCTTGCAAAGAGATCACGCACTCGCGAAGAACCGACACCGACAAACATCTCAATAAA 12868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618393780302480