Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1370 149 7e-31 seq296 113 5e-20 seq624 100 3e-16 seq1193 84.2 3e-11 >seq1370 Length=7093 Score = 149 bits (164), Expect = 7e-31 Identities = 290/428 (68%), Gaps = 9/428 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || | || ||||| || || ||| | || ||| | Sbjct 5507 CCTCAGCACATGCTGATGCGTGTCGCTGTTGGCATTCACGGTGATGACGTCGAAGCTGCC 5566 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| | |||||| || | |||| |||||| |||| || ||||| Sbjct 5567 ATTGAGACTTACAATCTCATGTCCGAAAAGTTTTTCACCCACGCATCACCCACGCTCTTT 5626 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||||||||| || || |||||||| ||||| ||| | || ||| |||| || Sbjct 5627 AATGCTGGTACCCCTCATCCACAAATGTCTAGTTGTTTCTTGCTCACCATTGAGGATGAT 5686 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || ||||| || || | | ||||| ||||||||| ||||| Sbjct 5687 TCCATTGAAGGCATCTACTCTACCCTAAAGACATGTGCCATGATCTCAAAGACTGCTGGT 5746 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 |||||||| | |||| || | | || | | || |||| || |||||| Sbjct 5747 GGTATTGGCTTAAACATTCACAAGATCAGGTCTTCTGGTTCATATATTGCTGGAACAAAT 5806 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 |||| ||| |||| |||||||||||||| ||||| |||||| ||| || || ||||| Sbjct 5807 GGTCTATCCAATGGCATTATTCCAATGCTACGCGTCTTTAACAACACTGCCCGATATGTG 5866 Query 104582 AATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 |||| | ||| ||| | | || || | || | ||| |||||||||||||| Sbjct 5867 GATCAGGGTGGCAATAAGCGGCCA---GGTGCTTTTGCCATGTATATTGAGCCATGGCAC 5923 Query 104636 GCGGATAT 104643 || ||||| Sbjct 5924 GCTGATAT 5931 >seq296 Length=20057 Score = 113 bits (124), Expect = 5e-20 Identities = 212/309 (69%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 169201 ATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACC 169260 ||||||||||||||| | | | ||||| || || ||| |||| | |||| | || || Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 169261 CTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGT 169320 ||||| || |||| || | ||||| |||| | |||| || ||| | ||| | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTCTGCATTGCCTGTAATCTGAGA 13289 Query 169321 GACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATC 169380 | || || || ||||| | ||| || |||||||| || ||||| ||| || Sbjct 13290 ATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGTC 13349 Query 169381 ACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGAC 169440 |||||||||||| || || || | || || || | ||| || |||||||| || |||| Sbjct 13350 ACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTGGCAGAGTCACCTTCAGTGAG 13409 Query 169441 GATGAGCGTACATT---TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTT 169497 || | || |||| |||| ||| | || || || ||||| ||||| || ||||| Sbjct 13410 AATTAATGTGCATTTGCTTCC--ATTCCG-AGTTCCAGCATTGTTGGCATCGTCTAATTT 13466 Query 169498 GGGAATACC 169506 | |||||| Sbjct 13467 AGTAATACC 13475 >seq624 Length=13322 Score = 100 bits (110), Expect = 3e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || |||| || || || || ||||| | |||||| | ||||| | || Sbjct 7885 AGTACCTTGCATTCGCAAAAAGGCCGACTGGGCACTCAAGTGGATCTCGGATACGGAATC 7826 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||||| | ||| || | |||||||| ||| ||||||||||| ||||| || Sbjct 7825 AAG---CTTTGGAGTGCGGCTTGTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGG 7769 Query 94851 TTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 ||||| ||| || || | |||||||||||| || ||||| ||||| || || |||| Sbjct 7768 ATCCTT-TGCAGCCATCTTTTGGCTCAAGAAACGTGGTCTTATGCCCGGCCTGACATTCT 7710 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 | |||||| | || || ||||| ||||| || || Sbjct 7709 CTAACGAGTTGATTTCACGTGATGAGGGTCTTCA 7676 >seq1193 Length=8092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/137 (74%), Gaps = 9/137 (7%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || |||||||||| ||| |||| |||||||||||||| ||||| |||||| ||| || Sbjct 8012 GGAACAAATGGTCTATCCAATGGCATTATTCCAATGCTACGCGTCTTTAACAACACTGCC 7953 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || ||||| |||| | ||| ||| | | || || | || | ||| ||||| Sbjct 7952 CGATATGTGGATCAGGGTGGCAATAAGCGGCCA---GGTGCTTTTGCCATGTATATTGAG 7896 Query 104627 CCATGGCACGCGGATAT 104643 ||||||||||| ||||| Sbjct 7895 CCATGGCACGCTGATAT 7879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583221736107920