Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1370 111 2e-19 seq1193 89.7 6e-13 >seq1370 Length=7093 Score = 111 bits (122), Expect = 2e-19 Identities = 285/429 (66%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | | ||||| ||||| || ||||| || || || ||| || || | Sbjct 5507 CCTCAGCACATGCTGATGCGTGTCGCTGTTGGCATTCACGGTGATGACGTC----GAAGC 5562 Query 19163 CGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218 || ||||| ||| | || ||| | | ||||| ||||| ||||| | || || || Sbjct 5563 TGCCATTGAGACTTACAATCTCATGTCCGAAAAGTTTTTCACCCACGCATCACCCACGCT 5622 Query 19219 TTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGA 19278 || || || ||||| | || || ||||| || |||||| | | | || |||| Sbjct 5623 CTTTAATGCTGGTACCCCTCATCCACAAATGTCTAGTTGTTTCTTGCTCACCATTGAGGA 5682 Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTC 19338 ||| |||||| ||||||||| || || ||| || || ||||| ||| | Sbjct 5683 TGATTCCATTGAAGGCATCTACTCTACCCTAAAGACATGTGCCATGATCTCAAAGACTGC 5742 Query 19339 CGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGA 19397 || ||||| || | || | | | || ||| |||| |||| || || ||| | Sbjct 5743 TGGTGGTATTGGCTTAAACATTCAC-AAGATCAGGTCTTCTGGTTCATATATTGCTGGAA 5801 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | || || || || | || || | |||||||| |||||||| |||||||| ||| | | Sbjct 5802 CAAATGGTCTATCCAATGGCATTATTCCAATGCTACGCGTCTTTAACAACACTGCCCGAT 5861 Query 19458 ACGTCAACCAGGGGGGCGGCAAACG--CAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 | || | ||||| ||| || || || | ||| || ||||| || | |||||||| Sbjct 5862 ATGTGGATCAGGGTGGCAATAAGCGGCCAGGTGCT--TTTGCCATGTATATTGAGCCATG 5919 Query 19516 GCACGCGGA 19524 |||||| || Sbjct 5920 GCACGCTGA 5928 >seq1193 Length=8092 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCG 20677 ||||| | ||| |||| || |||||||||||| |||| ||| || || ||| | || Sbjct 6253 CTCAAAGCCATCTACAAAACTGTATGGGAAATCTCACAAAAGGTTATTATTGACCTCGCT 6194 Query 20678 GCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGG-AGA-ATC 20735 || || || || || | || || || || ||||| || ||| || ||| || ||| Sbjct 6193 GCTGACCGTGGTGCATTTATTGATCAATCGCAGTCACTGAATATCCATTTGGCCGAGATC 6134 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 | | || || |||| | |||||| | |||||||||| |||||| |||||||| | Sbjct 6133 --AACTACGCCAAACTGACCAGCATGCACTTTTACGGCTGGCGCAAGGGACTCAAGACAG 6076 Query 20796 GCATGTACTATCTGCGG 20812 | ||||| |||||| || Sbjct 6075 GTATGTATTATCTGAGG 6059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548488062551520