Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1193 89.7 6e-13 >seq1193 Length=8092 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||| | || ||| || || ||||| || |||| ||| | | |||||| | | Sbjct 6253 CTCAAAGCCATCTACAAAACTGTATGGGAAATCTCACAAAAGGTTATTATTGACCTCGCT 6194 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA-GA-ATC 55844 ||||| |||||||| | || || || || ||||| ||||| ||| ||| || ||| Sbjct 6193 GCTGACCGTGGTGCATTTATTGATCAATCGCAGTCACTGAATATCCATTTGGCCGAGATC 6134 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 || ||||| ||| | |||||||||||||| ||| |||||||||||||| | Sbjct 6133 AACTAC--GCCAAACTGACCAGCATGCACTTTTACGGCTGGCGCAAGGGACTCAAGACAG 6076 Query 55905 GTATGTACTATCTGCGG 55921 ||||||| |||||| || Sbjct 6075 GTATGTATTATCTGAGG 6059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547179350208400