Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq274 161 1e-34 seq3174 159 4e-34 seq1447 131 2e-25 >seq274 Length=20666 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| ||||| || ||||| || || | || || |||||| Sbjct 18986 ATGCAAATCTTTGTCAAGACCCTTACGGGTAAGACAATCACCTTGGAAGTCGAGTCATCC 19045 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || || || |||||||| || || |||||| Sbjct 19046 GACACCATTGATAATGTCAAGGCCAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCAG 19105 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| ||||| || ||||||| ||||| || | || || ||| Sbjct 19106 CAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTTCGGATTACAAT 19165 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || |||||||| || || | || ||||| || || Sbjct 19166 ATCCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGCCTTCGTGGAGG 19212 >seq3174 Length=2562 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 |||| ||||||||| || |||||||| || || |||||||| || || |||||||| ||| Sbjct 1669 ACTACAATGCAAATATTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAG 1728 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 || ||||| |||| ||| | ||||| || ||||| |||||||| ||||| || || Sbjct 1729 TCTTCTGATACTATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCT 1788 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||||||||||||| || |||||||| |||||||||||||| Sbjct 1789 GACCAGCAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGA 1829 >seq1447 Length=6688 Score = 131 bits (144), Expect = 2e-25 Identities = 145/192 (76%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 27442 ATTACTCTTG-AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGA 27500 || |||||| |||| ||||| || | |||| ||| | ||||| || |||||||| Sbjct 2374 ATAACTCTTCTAGGTCGAGTCCTCAGACACTATTGACAATGTCAAGGCCAAGATTCAGGA 2315 Query 27501 CAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || |||||||| ||||| |||||||||||||| ||||| ||||| ||||| || || || Sbjct 2314 TAAAGAGGGAATCCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAAGA 2255 Query 27561 TGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | ||||| || ||||||| || |||| ||||| || |||||||| || || | || Sbjct 2254 CGGCCGTACTCTTTCAGACTACAACATCCAGAAGGAGTCTACTCTTCACCTTGTTCTTCG 2195 Query 27621 TCTTCGCGGTGG 27632 ||| || || || Sbjct 2194 TCTCCGTGGAGG 2183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570272203460960