Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq274 149 1e-30 seq1447 125 2e-23 seq3174 95.1 3e-14 >seq274 Length=20666 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || |||||||||||||| |||||||| ||||| || ||||||| ||| Sbjct 19210 TCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAAAG 19151 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || |||||||| || ||||| || | || || |||||||| || | Sbjct 19150 AGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGGAT 19091 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| || || || |||||||| || || || || |||||||| || || || || Sbjct 19090 TCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACTTC 19031 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| ||||| || ||||| ||||| | ||||| Sbjct 19030 CAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 >seq1447 Length=6688 Score = 125 bits (138), Expect = 2e-23 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || |||||||||||||| ||||| || |||||||| || || | ||| Sbjct 2185 TCCACGGAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAG 2244 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||| ||||||||||| ||||| || || || || ||||||||||| | Sbjct 2245 AGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGAT 2304 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| || || ||||| ||||| || || || || || ||||| ||| || |||| Sbjct 2305 TCCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGGACTCGACCTA 2364 Query 211070 G-AGAGTGATC 211079 | ||||| ||| Sbjct 2365 GAAGAGTTATC 2375 >seq3174 Length=2562 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || ||||| || || ||||| || || || |||||||| || | ||||||| Sbjct 1832 CCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCC 1773 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || || || || || || ||||| || ||||| || ||| Sbjct 1772 TTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCAAGGGTG 1713 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| || || || ||||| || || | |||||| || Sbjct 1712 ATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATTGTA 1671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159072424939670