Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1370 215 7e-51 seq624 168 9e-37 seq1193 105 9e-18 >seq1370 Length=7093 Score = 215 bits (238), Expect = 7e-51 Identities = 485/721 (67%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||||| |||||||| || | ||| || || | | | || || || ||||| || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | ||||| ||| ||||| ||| | || | | |||||||||||| || || ||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 ||||||||||||| |||||| ||| | | || || |||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || || || || |||| || || | || || || | ||| |||||| || || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 || |||||| ||| | || | ||||| ||||||||||| ||||| || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 |||||||| | || || ||||| || || || | ||||| || | |||||||| || Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 78465 TCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||||| || | ||| | ||| || | ||||| || || || |||||||||| ||| || Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 |||||| | ||| | || || || || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 78584 AAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 || ||||| |||||||| ||||| |||| || || ||||| | ||||| || Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 78642 TCTTTGTATTTGGTAACAAT---ATCCATGACAGTAGTTGAAATAATAGGAGATCGTACA 78698 || | || | | || || |||||| || | || || |||||||| || Sbjct 5394 TC--CGAATGT-TTCACGATGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTG 5338 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttttttt 78758 || || ||||| | || || ||||||||||| ||| ||| || |||| ||| Sbjct 5337 TTGTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTT 5278 Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 ||||||||||| | || || | || || | ||||| || |||||||| || || ||| Sbjct 5277 GTTTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGT 5218 Query 78819 T 78819 | Sbjct 5217 T 5217 >seq624 Length=13322 Score = 168 bits (186), Expect = 9e-37 Identities = 314/455 (69%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| || || | || ||||| || || || || || || ||||| || |||||||||| Sbjct 7357 CATTACACCACTCTTCTGATACTCGCCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCTTG 7416 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT---AACTGCATTATAAAtttttttAAA 47953 || || ||| ||||||| |||||||||||||| ||| || ||| ||| | Sbjct 7417 CAGAGAGATAATTTCCATGAAATCAAATGGATTCTCAAC-GCCGTATGC--TTTGGGGAG 7473 Query 47954 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACA 48013 || | ||| ||| || | || ||||| || || |||||||| ||||| | | Sbjct 7474 CCCGAGTTCCAAAAAGAGACGGTCAGCAACAAACTCAATATATCTCTTCATGAGATTGGC 7533 Query 48014 ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGAC 48073 |||||| || || ||| |||||| || ||||| || || ||||| ||||| |||| || Sbjct 7534 ATTCATGCCAATCAGTGCAACTGGGAGCGCCTCGGTCAGGAACTCCTGTTCAATAGCAAC 7593 Query 48074 AGCATC---CACTATTATCGATGTT--ACCGTTTCCTCACTTGGTGGATACAACAAATGT 48128 || || || ||| | || |||| || | ||| || | | || Sbjct 7594 TGCCTCGGTCAAGATTT--GGTGCACAACCGAGTCTGC---TGGCTTATTCTTGAGGAGT 7648 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 | |||| || ||| ||||| || ||||||||| ||||| | ||| || |||||| Sbjct 7649 GTGAACAATAGACAAGCAAAGTCGGTATGAAGACCCTCATCACGTGAAATCAACTCGTTA 7708 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 || ||||| || |||||||| || |||||||| ||||||||||| || || || || ||| Sbjct 7709 GAGAATGTCAGGCCGGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGCTGCAAAGGAT 7768 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 || || || || || || || || || |||||||| Sbjct 7769 CCTGAGAAAAAGATACCCTCGACAGCAGCAAATGC 7803 Score = 127 bits (140), Expect = 3e-24 Identities = 227/329 (69%), Gaps = 3/329 (1%) Strand=Plus/Plus Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATT 48422 || || ||||||| ||| | ||| | || || || || || || || ||||| || Sbjct 8045 GTATCAATAGCATCAAATAAAAATGTACGCTCCTTCCTGTCCTTGACATATGTATCAATC 8104 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 || || ||||| || ||| || |||||||| ||||| || ||||| ||| | Sbjct 8105 AATAGCGAGTACATCTCACTGTGGATGTTTTCAATCATGATCTGGAAGCCGTAGAAATAG 8164 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 | ||||| || || || || | ||||||| ||| | | ||||||||| || || Sbjct 8165 CGAGCTTCGAAAATTTGAACATCTTGAGAAAATCGCTCAACAAGATTCTCATTAACAATG 8224 Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC 48602 |||||| ||||| ||||| || || ||| | |||||| || ||| | ||| Sbjct 8225 CCATCAGAGGCAGCGAAAAAGGCCAACACACGAGAAATAAAGTAGCGTTCATCATCAGTA 8284 Query 48603 AGTT--TATTCC-AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 || | |||| ||||| || | |||||||| | |||||||| || || ||||| || Sbjct 8285 AGACGCTCTTCCCAGTCAATGGTGTCTTTTGAAAGGTCTACTTCCTCGGCAGTCCAGAAA 8344 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCA 48688 || || ||||||||||| ||||| ||||| Sbjct 8345 GAAGCTTCTGCTTTTTTGTACATGTTCCA 8373 >seq1193 Length=8092 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||||| |||||||| || | ||| || || | | | || || || ||||| || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | ||||| ||| ||||| ||| | || | | |||||||||||| || || ||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 78225 GTTCCATTTGTTCCAGAAATATA 78247 ||||||||||||| |||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694622274557120