Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1370 279 7e-70 seq624 158 2e-33 seq1193 123 4e-23 >seq1370 Length=7093 Score = 279 bits (308), Expect = 7e-70 Identities = 498/721 (69%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||||| |||||||| || | ||| || || | | |||| || || ||||| || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||||| ||||||||| ||| | || | | ||||||||||||||| || ||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 |||||||||||||| |||||| ||| | | | || || ||| || ||| Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || || || || | || ||||| | ||||| || | || |||||||| || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 || ||||||| ||| | || | ||||| ||||||||||| ||||| || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 |||||||| | || || ||||| || ||||| | ||||| || | |||||||| || Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 77060 TCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||||| | ||||| | || || | ||||| || |||||||||||||||| ||| || Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 |||||| || || |||| || || || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 77179 AAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTG 77236 || ||||| |||||||| ||||| |||| || || ||||| ||||||| || | Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 77237 TCCTTATATTTGGTAACAAT---ATCCATGACAGTGGTAGAAATAATTGGAGATCGTATT 77293 ||| || || | || || |||||| || | || || || ||||| || | Sbjct 5394 TCCGAATGTT---TCACGATGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTG 5338 Query 77294 CCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGttttttt 77353 || || ||||| | || || |||||| |||| ||| || | || |||| ||| Sbjct 5337 TTGTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTT 5278 Query 77354 GTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGT 77413 ||||||||||| | || || | ||| || | |||||| || || |||||||| || ||| Sbjct 5277 GTTTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGT 5218 Query 77414 T 77414 | Sbjct 5217 T 5217 >seq624 Length=13322 Score = 158 bits (174), Expect = 2e-33 Identities = 235/330 (71%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || ||||||| ||| | ||| | || | || || || ||||||||||| || Sbjct 8045 GTATCAATAGCATCAAATAAAAATGTACGCTCCTTCCTGTCCTTGACATATGTATCAATC 8104 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 || || ||||| || || ||||||||||| ||||| || ||||| ||| | Sbjct 8105 AATAGCGAGTACATCTCACTGTGGATGTTTTCAATCATGATCTGGAAGCCGTAGAAATAG 8164 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTAT 47030 | ||||| ||| || || ||| | ||||||| ||| |||| ||||||||| || || Sbjct 8165 CGAGCTTCGAAAATTTGAACATCTTGAGAAAATCGCTCA-ACAAGATTCTCATTAACAAT 8223 Query 47031 TCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATA---TTTTTCATCGGT 47087 |||||| ||||| ||||| ||||| ||| | |||||| || || ||||| || Sbjct 8224 GCCATCAGAGGCAGCGAAAAAGGCCAACACACGAGAAATAAAGTAGCGTTCATCATCAGT 8283 Query 47088 AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAA 47147 | | | | ||||||| || | |||||||| | |||||||| || || |||||||| Sbjct 8284 AAGACGCTCTTCCCAGTCAATGGTGTCTTTTGAAAGGTCTACTTCCTCGGCAGTCCAGAA 8343 Query 47148 TGACGCCTCTGCTTTTTTATACATATTCCA 47177 || || ||||||||||| ||||| ||||| Sbjct 8344 AGAAGCTTCTGCTTTTTTGTACATGTTCCA 8373 Score = 154 bits (170), Expect = 2e-32 Identities = 347/516 (67%), Gaps = 9/516 (2%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| || || | || || || || || || || || || ||||| || |||||||||| Sbjct 7357 CATTACACCACTCTTCTGATACTCGCCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCTTG 7416 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 || || ||| ||||||| |||||||| ||||| ||| || ||| | || Sbjct 7417 CAGAGAGATAATTTCCATGAAATCAAATGGATTCTCAACGCCGTATGCTTTGGGGAGCCC 7476 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | ||| ||| || | || ||||| || || ||||| | ||||| | | ||| Sbjct 7477 GAGTTCCAAAAAGAGACGGTCAGCAACAAACTCAATATATCTCTTCATGAGATTGGCATT 7536 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || || ||| || || || ||||| || || ||||| |||||||||| || || Sbjct 7537 CATGCCAATCAGTGCAACTGGGAGCGCCTCGGTCAGGAACTCCTGTTCAATAGCAACTGC 7596 Query 46566 ATCCGATATTATC-GATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAA 46622 || | | || | || || | || | ||| || | | | || | || Sbjct 7597 CTCGGTCAAGATTTGGTGCACAACCGAGTCTGC---TGGCTTATTCTTGAGGAGTGTGAA 7653 Query 46623 CATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAA 46682 || || ||| ||||| || |||||| || ||||| | ||| || |||||||| || Sbjct 7654 CAATAGACAAGCAAAGTCGGTATGAAGACCCTCATCACGTGAAATCAACTCGTTAGAGAA 7713 Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGA 46742 ||| || || ||||| || ||||| || ||||||||||| || || || || ||||| || Sbjct 7714 TGTCAGGCCGGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGCTGCAAAGGATCCTGA 7773 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT 46802 || || || || || ||||| || ||||| ||||| | | |||| | || | || | Sbjct 7774 GAAAAAGATACCCTCGACAGCAGCAAATGCAACAAGCCGCACTCCAAAGCTTGATTCCGT 7833 Query 46803 AT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 || || |||||| | | ||||| || |||||||| Sbjct 7834 ATCCGAGATCCACTTGAGTGCCCAGTCGGCCTTTTT 7869 >seq1193 Length=8092 Score = 123 bits (136), Expect = 4e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||||| |||||||| || | ||| || || | | |||| || || ||||| || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||||| ||||||||| ||| | || | | ||||||||||||||| || ||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 76820 GTACCATTTGTTCCAGAAATATA 76842 |||||||||||||| |||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712886651218560