Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq274 116 9e-21 seq3174 89.7 1e-12 seq1447 86.0 1e-11 >seq274 Length=20666 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||||||||||||||| ||||| |||||||| | | ||| | ||||| Sbjct 19198 GAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGAAAGAGTACGGCCATC 19139 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || ||||| || | | ||||||||| | | |||||| || || Sbjct 19138 CTCAAGCTGCTTT--CCAGCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTA 19081 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || |||||| | || | | |||| || ||| ||||| | || || Sbjct 19080 TCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATT 19021 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||| || |||| ||||| Sbjct 19020 GTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 >seq3174 Length=2562 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| || | ||||||||| | | |||||||||||| |||||||| || Sbjct 1817 TTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGAATCTTG 1758 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | || ||| |||||| ||||| || || || ||||| || Sbjct 1757 GCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCAAGGGTGATGGTCTTGCCAGTC 1698 Query 152082 AGAGTCTTCACGAAGACCTGCATTTTA 152108 || ||||| ||||| | |||||| || Sbjct 1697 AGGGTCTTGACGAATATTTGCATTGTA 1671 >seq1447 Length=6688 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||||||||| || ||||||||||| || | | ||| | || ||| Sbjct 2198 AGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCGTCT 2257 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | ||||||||| | | |||||| || || || Sbjct 2258 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATTCCCTCTTTATCC 2317 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047 ||||| || |||||| | || | ||||||| Sbjct 2318 TGAATCTTGGCCTTGACATTGTCAATAGTGTCTGA 2352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153741590923218