Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq274 150 4e-31 seq3174 132 1e-25 seq1447 98.7 2e-15 seq624 98.7 2e-15 seq296 93.3 9e-14 seq1440 87.8 4e-12 seq928 87.8 4e-12 >seq274 Length=20666 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | || ||||| ||||| ||||| || | Sbjct 19213 ACCTCCACGAAGGCGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCCGA 19154 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || || || |||||||| || |||||| || Sbjct 19153 AAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGGGG 19094 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| || ||||||||||| || || || |||| || ||||| || | ||||| Sbjct 19093 GATTCCCTCTTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCGAC 19034 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| ||||||||||| | ||||| || || || ||||| Sbjct 19033 TTCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGACAAAGATTTGCAT 18986 >seq3174 Length=2562 Score = 132 bits (146), Expect = 1e-25 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 282928 CAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCAC 282987 ||| ||| |||||||| ||||| ||||| || || |||||||| | ||| || |||||| Sbjct 1846 CAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAG 1787 Query 282988 CCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTT 283047 || || || ||||||||||| ||||| || || || | || ||||| || |||| | Sbjct 1786 GTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACT 1727 Query 283048 CGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || || || ||||| ||||| || |||| ||||| |||||||| |||||| Sbjct 1726 CTACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATT 1674 >seq1447 Length=6688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | || || || |||||||||||||| | Sbjct 2182 ACCTCCACGGAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 2241 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| || || || || || || || || |||| ||| || |||||| || Sbjct 2242 AAGAGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGG 2301 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| || || || ||||| || || || | || |||||||| || | ||||| Sbjct 2302 GATTCCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGGACTCGAC 2361 Query 283052 TTCG-AGAGTGATC 283064 | | ||||| ||| Sbjct 2362 CTAGAAGAGTTATC 2375 >seq624 Length=13322 Score = 98.7 bits (108), Expect = 2e-15 Identities = 179/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213 ||| | |||||| | || || | |||||| | |||| |||||||| | ||| || | Sbjct 7617 GTGCACCAAATCTTGACCGAGGCAGTTGCTATTGAACAGGAGTTCCTGACCGAGGCGCTC 7558 Query 230214 CC--TTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAG 230271 || |||| || || ||||||||||| |||||||| | |||||| || || || | Sbjct 7557 CCAGTTGCA--CTGATTGGCATGAATGCCAATCTCATGAAGAGATATATTGAGTTTGTTG 7500 Query 230272 CTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCG 230331 |||| ||| | || ||| || ||| | |||| || | |||| || || | Sbjct 7499 CTGACCGTCTCTTTTTGGAACTCGGGCTCCCCAAAGCATACGGCGTTGAGAATCCATTTG 7440 Query 230332 CTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCG 230391 ||| ||||| | || || || || || ||||| ||||| || |||||||| ||| ||| Sbjct 7439 ATTTCATGGAAATTATCTCTCTGCAAGGCAAAACCAACTTTTTTGAAAAGCGAGTCGGCG 7380 Query 230392 ATTATCAAAGGCCCGGTGTA 230411 | ||||| | | |||||| Sbjct 7379 AGTATCAGAAGAGTGGTGTA 7360 >seq296 Length=20057 Score = 93.3 bits (102), Expect = 9e-14 Identities = 174/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 274544 ATCTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCC 274603 ||| ||||||||||| | ||||||||| || || || |||| ||| | ||| | || || Sbjct 13170 ATCCGTCATGATCATTAAATGTCCATATCGCAGTGACGAAGCATCATCATAGACTTTTCC 13229 Query 274604 TGTTTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGC 274663 ||| || || ||||||||||||| ||| | || ||| | || ||| || | Sbjct 13230 ATGTTGCAGTCCCAGAATTTGCTTGATGGCGTTAATCTCTGCATTGCCTGTAATCTGAGA 13289 Query 274664 CACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTC 274723 | ||| ||||| || || || | ||| ||||| ||||| || || ||| | | || Sbjct 13290 ATGTGTAGCCTCACGGACATTAAGAAGCTTTCCGCGAAGAGGAAACACACCAAAGTTGTC 13349 Query 274724 GCGCCCGATGACCGAAAGACCGGCGATCGC--GAGAGTTGCTGCTGAATCTCCCTCTGTG 274781 || || | ||| ||||| || | | ||| | || ||| || || || || || ||| Sbjct 13350 ACGACCAACGACTGAAAGGCCAGAAACCGCAAGGGACTTG--GCAGAGTCACCTTCAGTG 13407 Query 274782 AGAATCAAAGTACA 274795 ||||| || || || Sbjct 13408 AGAATTAATGTGCA 13421 >seq1440 Length=6742 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 |||||||||||||| |||||||| || ||| | || | ||| | || | |||||||| Sbjct 1501 TAACGCCATTGGATATACTGATTAGGGGTCTTTTCTAAATGCTGTTCTAGATGGTGGAAT 1560 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACG 316290 || |||||||| ||||| | | ||||| ||| || |||||||| ||| Sbjct 1561 GCATGCTGTGCAACGTAGCCTACACGCAGATTGGGGTGCTTCCACACG 1608 >seq928 Length=10049 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || || ||||| |||| ||| || | || | ||||| ||| || || || | | Sbjct 1436 ACACCGCCTCCAAAATCGGTAATGGCACCAGCAAGAGCACCAAGAGAGTCACGATCAAGA 1495 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCGATA 315786 ||||||| |||||||||||||||| | ||| || || | ||| | | ||||| | | Sbjct 1496 TAGTTGGTAGGCTCATCAAGAACGAGCATGTGAGGCTGGTTCCACATACAAGCGCCAAGA 1555 Query 315787 ACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAGTGGTAAATTCT 315846 || | ||| | ||||| |||||||| || || || || || || || | | ||| || Sbjct 1556 ACAACCTTGACCTTTTGACCACCAGAAAGACCTCGCATACGCGAGTGCGATGAAAACTCG 1615 Query 315847 GGGTCAAGGCCAACAT 315862 |||||||| || |||| Sbjct 1616 GGGTCAAGACCCACAT 1631 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| || || |||| || | |||||| || ||||| || |||| Sbjct 2789 GGGAAACCGTCAAGCTGTCCATTAGCAATGGCACGCATCAGAGTGGACTTTCCGACACCG 2848 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||| || || ||||| || || || | ||| || |||| |||||| Sbjct 2849 TTGGGACCACAGAGACCGTAGATCTTGCCACGAGTAAGACGGAACTTGGTGCTGTTCAAT 2908 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 |||||| |||||||||| || |||||||||||||| | || || ||||| || Sbjct 2909 AGAATCATACCACCATAAGCGAGAGAGAACTCACAGTTGCAGAGCTCCTCACC 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046667342008132