Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1447 122 2e-22 seq3174 113 1e-19 >seq1447 Length=6688 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 177964 TCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAG 178023 || |||| || ||||||||| || || || ||||| ||||||||||| ||||| | Sbjct 2366 TCTAGGTCGAGTCCTCAGACACTATTGACAATGTCAAGGCCAAGATTCAGGATAAAGAGG 2307 Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||||||||| |||||||| || || || ||||| || || ||||| ||||| || | | Sbjct 2306 GAATCCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGTA 2247 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| | || || ||| |||| || || || || || || |||||| Sbjct 2246 CTCTTTCAGACTACAACATCCAGAAGGAGTCTACTCTTCACCTTGTT 2200 >seq3174 Length=2562 Score = 113 bits (124), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || |||||||| ||||| || || || Sbjct 1678 CAAATATTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAGTCTTCTGAT 1737 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||| ||||| ||||||||||| || |||||||| Sbjct 1738 ACTATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGACCAGCAG 1797 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 || || ||||| || ||||| || ||||| || || | |||||| Sbjct 1798 CGTCTCATCTTTGCTGGAAAGCAACTCGAGGACGGCCGCACTCTT 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203648564605452