Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq16 114 3e-20 >seq16 Length=823159 Score = 114 bits (126), Expect = 3e-20 Identities = 575/897 (64%), Gaps = 32/897 (4%) Strand=Plus/Minus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||||||| | || | || ||||| |||||||||| ||||||| || ||||||| Sbjct 377659 GTTCCCAATCAAGTACCATGAGGTGTGGAATATGTACAAAAAGGCGGAAGCGTCTTTCTG 377600 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || | ||||||| || ||| | || ||| | ||||| || || || | Sbjct 377599 GAACGCTGAGGAGGTGGATCTCT-CACATGACAAAATACACTGG---GAAAAGCTTTCAG 377544 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 | |||| ||| | || ||||| ||||||||| || || || | ||| ||||| |||| Sbjct 377543 AACACGAGCGTTACTTTATCAAGAACATCCTAGCATTCTTTGCTGCCTCGGATGGAATTG 377484 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 | | ||||| ||| || ||||||||| || ||| | ||||||||||| | | Sbjct 377483 TCAATGAAAACCTGGTGAGCAACTTTAGCAATGAGGTACAGATTCCAGAGGCAAGATGTT 377424 Query 229997 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATG----CTCTGCTT 230052 | |||| | ||||| ||| || | ||||| | | | ||| | ||||| Sbjct 377423 TCTATGGGTTCCAAA---TCAT-GATTGAGAACATTCACAGCGAAATGTACTCACTGCTG 377368 Query 230053 ATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAAC 230112 | ||| | ||| || ||| ||| |||| | || ||| | || ||||| ||| Sbjct 377367 CTGGACACATACATTCAAGATGAGGCAGAGAAGAACCACCTGTTTAACGCAATTGACAAC 377308 Query 230113 ATCCCG-GCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAA--- 230168 || ||| || | | || |||||||||||||| | ||| ||| | || | | | Sbjct 377307 ATTCCGTGCATTGGAGAA-AAGGCAAAGTGGGCCCTGAAGTGGATTGATGACGATGAGGC 377249 Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 | | |||| |||||| | | || | | ||||| |||||| | ||||| || Sbjct 377248 ACCATTTGGTGAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATTTTCTTTTCAGGATC 377189 Query 230229 TTTCTGC-GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 || ||| || || || ||||| || | ||| ||||||| || || | || | Sbjct 377188 GTT-TGCAGCAATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGACTTACATTCTCCA 377130 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 | ||| | || | ||||| || || | || | | || | | || | ||||| Sbjct 377129 ATGAGCTTATTTGCCGCGATGAAGGGTTACACACAGACTTTGCCTGTCTGCT--ATTCAG 377072 Query 230348 AGCTC-CAG-AACAAGCTACCATTCGAGAC---GGTCAAACAAATCATTACAGAAGCAGT 230402 || ||| ||||||| | | ||| | ||||| || | || || || Sbjct 377071 CCATCTCAGCAACAAGC---CTTCTGAGGCCAAGGTCAGGGGCATTGTGCTTGAGGCTGT 377015 Query 230403 TGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCATGAACG 230461 || | ||| | ||||| | || | | ||| | |||| | || || |||||| Sbjct 377014 TGTCATTGAACAAAAGTTCTTGACAGAGTCGTTGCCAGTATCGC-TGATCGGAATGAACA 376956 Query 230462 CTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 || ||| ||| | || ||||| || || || ||||| | | | | || || || | Sbjct 376955 GTGCACTGATGTGCCAATACATTGAGTTTGTTGCCGATAGACTGCTCATAGCTCTGGGAT 376896 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 | ||| |||||||| |||| || |||| |||||||| | ||||| | |||| Sbjct 376895 TCTCCAAACACTACAACTCGCAGAATCCATTTGACTTTATGGACATGATTTCAATGCAAG 376836 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 | ||||||||||| |||||||| ||||| ||||| |||| | ||||||| |||| Sbjct 376835 GCAAGACCAACTTTTTCGAAAAACGTGTTTCCGACTACCAGAAGGCTGGTGTCATGA 376779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823024157360