Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq16 131 2e-25 >seq16 Length=823159 Score = 131 bits (144), Expect = 2e-25 Identities = 566/885 (64%), Gaps = 20/885 (2%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| ||| ||| ||||||||||||||||| || ||||| | | || || | ||| Sbjct 376796 TGGTAGTCGGAAACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCC 376855 Query 16736 ATGAAATCAAAAGGAT--TAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 || || ||||| |||| | || || | ||| ||| | ||||| | || | Sbjct 376856 ATAAAGTCAAATGGATTCTGCGAGTTG--TAGTGTTTGGAGAATCCCAGAGCTATGAGCA 376913 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||| || ||||| || || ||||||||||| | | | | ||||||||| || || Sbjct 376914 GTCTATCGGCAACAAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCG 376973 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 ||| || | | || ||||| || ||| || || ||||| || || | ||| Sbjct 376974 ATACTGGCAACGACTCTGTCAAGAACTTTTGTTCAATGACAACAGCCTCAAGCACAAT-- 377031 Query 16914 TAGCAACT--CGTT--CCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 || || | || |||| || || | | | ||||| | || | |||||| || Sbjct 377032 --GCCCCTGACCTTGGCCTCAGAAGGCTTGTTGCTGAGATGGCTGAATAGCAGACAGGCA 377089 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 || || ||||| || || || | || ||||| || || || ||||| | || ||| Sbjct 377090 AAGTCTGTGTGTAACCCTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGC 377149 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| |||| || || | ||| || || || || ||||| || |||||||| |||||| Sbjct 377150 ATCAGCCCTCTCTTTTTGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCC 377209 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || || ||||||||| || || || | | | || || | || | |||||| Sbjct 377210 TCAACTACTGCAAACGCCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCCAC 377269 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA-- 17207 ||| | |||||| || |||| ||||| || | || || || ||||| | Sbjct 377270 TTCAGGGCCCACTTTGCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGG 377329 Query 17208 -ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 |||| | | ||| | | || || || || || | || || |||||||||| Sbjct 377330 TGGTTCTTCTCTGCCT-CATCTTGA--ATGTATGTGTCCAGCAGCAGTGAGTACATTTCG 377386 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||| |||||||| || || || || || || || |||| || || | || || Sbjct 377387 CTGTGAATGTTCTCAATCATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGT 377446 Query 17327 ACTTCCACG-TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || || | || | | | | | | || ||||| || || || || || || || || Sbjct 377447 ACCTCATTGCTAAAGTTGCT-CACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAA 377505 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | || | ||| || || || |||| || ||| ||||| | Sbjct 377506 GAATGCTAGGATGTTCTTGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTAT 377565 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | || | || | |||||| || || | | |||| ||| || | |||||||| || Sbjct 377566 TTTGTCATGTGAGAGATCCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTA 377625 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCT 17550 ||||||||| | |||| ||| | || ||||| | ||| |||| Sbjct 377626 CATATTCCACACCTCATGGTACTTGATTGGGAACAGCACAAATCT 377670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545134208960