Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq16 179 4e-40 >seq16 Length=823159 Score = 179 bits (198), Expect = 4e-40 Identities = 574/878 (65%), Gaps = 13/878 (1%) Strand=Plus/Plus Query 23859 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGAT 23918 ||||||||||||||||| || || || |||| | ||| || | ||||| || || || Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 23919 GGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACA 23978 ||||| || ||| | | ||||||| | | || |||||| || ||| Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 23979 AACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 24038 ||||| || ||| ||||| | ||| |||||||| || || ||||| | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 24039 ACAGT-AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC 24097 | || ||||| || ||||||||| || || || | ||| || || | | Sbjct 376988 TCTGTCAAGAACTT-TTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 24098 TTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 24156 ||| || | | | | | ||| | || | || ||| || || || ||||| | Sbjct 377047 CTCAGAAGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 | || || | | ||| | || ||||| || || ||||| ||||| || || | ||||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || | ||||| ||||| ||||||||||| || || ||| | ||||| | Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCT----GTCATGTATCCACTTTTGAGCCCAATCG 24332 | | | || ||| | || || ||||| |||||||| | ||||| | Sbjct 377226 CCGCCAAACGCTCACCAAATGGTGC-CTCATCGTCATCAATCCACTTCAGGGCCCACTTT 377284 Query 24333 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 24392 ||||| | | | || || || | || || || ||||| || | ||| || || | Sbjct 377285 GCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC-TGC 377343 Query 24393 CT-ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 || ||||| || ||||| || | || || |||||||| |||||||| ||||| Sbjct 377344 CTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAAT 377403 Query 24452 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC-AAAATC 24510 ||||| || || ||||||||||| ||||| | ||||||||| || | | ||| | Sbjct 377404 CATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTT 377463 Query 24511 GTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 24570 | || | | |||||||| || ||||| || ||| ||||| || || | | | | Sbjct 377464 GCTC-ACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCT 377522 Query 24571 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 24630 | ||||| || |||| | || || || | ||| | | | || | || | || Sbjct 377523 TGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGAT 377582 Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690 |||| || || | |||| || || || || |||||||| ||||||||||| | |||| Sbjct 377583 CCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCAT 377642 Query 24691 GATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 24728 | || | ||||| || | |||||||| |||| ||| Sbjct 377643 GGTACTTGATTGGGAACAGCACAAATCTGCTTGGGTTT 377680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721065650560