Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16 215 5e-51 >seq16 Length=823159 Score = 215 bits (238), Expect = 5e-51 Identities = 559/844 (66%), Gaps = 16/844 (2%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| || | || ||| | ||||| || | |||| || ||||| ||||||||| Sbjct 377679 AACCCAAGCAGATTTGTGCTGTTCCCAATCAAGTACCATGAGGTGTGGAATATGTACAAA 377620 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| || ||||| ||||||| || ||||||||||| || || | |||| | || Sbjct 377619 AAGGCGGAAGCGTCTTTCTGGAACGCTGAGGAGGTGGATCTCTCACATGACAAAATACAC 377560 Query 116714 TGGGAGC-GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 ||||| |||| | ||| |||||| | || |||||| || | || || || || || Sbjct 377559 TGGGAAAAGCTTTCAGAACA-CGAGCGTTACTTTATCAAGAACATCCTAGCATTCTTTGC 377501 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG--TTTCGCTCAGGAGGTGCAG 116830 ||| || || || ||||| || || ||||| |||| ||| || | ||||| ||| Sbjct 377500 TGCCTCGGATGGAATTGTCAATGAAAACCTGGT-GAGCAACTTTAGCA-ATGAGGTACAG 377443 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 | | ||||| | || ||||| || || || ||| || |||||| | ||| ||| Sbjct 377442 ATTCCAGAGGCAAGATGTTTCTATGGGTTCCAAATCATGATTGAGAACATTCACAGCGAA 377383 Query 116891 ATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTG 116950 ||||| || || | ||||| ||| | | | || |||||| || |||| Sbjct 377382 ATGTACTCACTGCTGCTGGACACATACATTCAAGATGAGGCAGAGAAGAACCACCTGTTT 377323 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 ||||| || || | || |||||| | ||| ||||| ||||||| ||| ||||| Sbjct 377322 AACGCAATTGACAACATTCCGTGCATTGGAGAAAAGGCAAAGTGGGCCCTGAAGTGGATT 377263 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | | ||||| | || || ||||| ||| ||| || || | || ||||| | Sbjct 377262 GATGACGATGAGGCACCATTTGGTGAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATT 377203 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 |||||||| || || || || || || |||||||| || | || || ||||| || Sbjct 377202 TTCTTTTCAGGATCGTTTGCAGCAATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGA 377143 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || ||| ||| ||||| || | | | || || || | || |||||||||||| Sbjct 377142 CTTACATTCTCCAATGAGCTTATTTGCCGCGATGAAGGGTTACACACAGACTTTGCCTGT 377083 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC-----GCGGCGCGCGTCAGGGAGATCG 117245 |||| |||| ||| | |||| | | ||| | ||| ||||||| || | Sbjct 377082 CTGCTATTCAGCCATCT----CAGC-AACAAGCCTTCTGAGGCCAAGGTCAGGGGCATTG 377028 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 | || || || | ||| || || ||| | || || || |||| || ||| Sbjct 377027 TGCTTGAGGCTGTTGTCATTGAACAAAAGTTCTTGACAGAGTCGTTGCCAGTATCGCTGA 376968 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 | ||| | || | | | ||||| |||||||| ||||| || ||||| || ||||| Sbjct 376967 TCGGAATGAACAGTGCACTGATGTGCCAATACATTGAGTTTGTTGCCGATAGACTGCTCA 376908 Query 117366 TCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCA 117425 | | |||| | |||| ||||||||| ||| || || | ||||||||| || | | Sbjct 376907 TAGCTCTGGGATTCTCCAAACACTACAACTCGCAGAATCCATTTGACTTTATGGACATGA 376848 Query 117426 TCTC 117429 | || Sbjct 376847 TTTC 376844 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || ||||| || ||| | || || || || | Sbjct 228685 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228626 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||| |||| || || ||||| ||||| | ||||| Sbjct 228625 GACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 228567 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || || ||||| || || || | |||||| | |||||||| Sbjct 228566 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 228507 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || ||||| Sbjct 228506 CATCCAAAAGGAGTCTACCCTGCA 228483 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || || || |||||||| || || ||||| || ||| | || || || | Sbjct 229373 AAAAATGCAGATCTTTGTCAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTC 229314 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | |||| ||||| |||| |||| || || ||||| ||||| | | Sbjct 229313 CTCAGACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAG 229255 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||||| | || | || || ||||| || || || | |||||| | |||| Sbjct 229254 ACCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACT 229195 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||| |||||| | || || ||| Sbjct 229194 ACAACATCCAAAAGGAGTCTACCCTTCAT 229166 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || ||||| || ||| | || || || || | Sbjct 228913 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 228854 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||| |||| || || ||||| ||||| | ||||| Sbjct 228853 GACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 228795 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || || ||||| || || || | |||||| | |||||||| Sbjct 228794 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 228735 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| |||||| | || || ||| Sbjct 228734 CATCCAAAAGGAGTCTACCCTTCAT 228710 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || ||||| || ||| | || || || || | Sbjct 229141 ATGCAAATCTTTGTTAAAACGCTGACTGGTAAAACAATTACCCTTGAGGTTGAGTCCTCA 229082 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||| |||| || || ||||| ||||| | ||||| Sbjct 229081 GACACAATCGACAACG-TCAAGCAAAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 229023 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || || ||||| || || || | |||||| | |||||||| Sbjct 229022 ACAACGTTTGATTTTTGCTGGAAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAA 228963 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| |||||| | || || ||| Sbjct 228962 CATCCAAAAGGAGTCTACCCTTCAT 228938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218736302720