Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq16 125 6e-24 seq56 107 2e-18 >seq16 Length=823159 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||| |||||||| || || ||||| |||||| Sbjct 228477 ACCAAGTGCAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228536 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| | || | ||| || || || || || || |||||||| || | Sbjct 228537 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228596 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| ||||| | | ||| ||||| | ||| | ||||| Sbjct 228597 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 228656 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| || ||||| Sbjct 228657 CCAGTCAGCGTTTTAACAAAGATTTGCAT 228685 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| ||||| |||||||| || || ||||| |||||| Sbjct 229161 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 229220 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| | || | ||| || || || || || || |||||||| || | Sbjct 229221 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229280 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| ||||| | | ||| ||||| | ||| | ||||| Sbjct 229281 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 229340 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| |||||||| Sbjct 229341 CCAGTCAGCGTTTTGACAAAGATCTGCAT 229369 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| ||||| |||||||| || || ||||| |||||| Sbjct 228705 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228764 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| | || | ||| || || || || || || |||||||| || | Sbjct 228765 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 228824 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| ||||| | | ||| ||||| | ||| | ||||| Sbjct 228825 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 228884 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| || ||||| Sbjct 228885 CCAGTCAGCGTTTTAACAAAGATTTGCAT 228913 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| ||||| |||||||| || || ||||| |||||| Sbjct 228933 ACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCA 228992 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| | || | ||| || || || || || || |||||||| || | Sbjct 228993 AGTTGTTTTCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGGATCCCCTCCTTATCCTGA 229052 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| ||||| | | ||| ||||| | ||| | ||||| Sbjct 229053 ATCTTTTGCTTGACGTTGTCGATTGTGTCTGAGGACTCAACCTCAAGGGTAATTGTTTTA 229112 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| || ||||| Sbjct 229113 CCAGTCAGCGTTTTAACAAAGATTTGCAT 229141 >seq56 Length=671324 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||| |||||||| ||| || || || |||||| Sbjct 567817 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCA 567758 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || || | || | ||| |||||||| || || || || ||||| || Sbjct 567757 AGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGG 567698 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||||||||| | |||| ||| || | || ||||||| ||| | || || Sbjct 567697 ATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACCTCGAGGGTGATGGTCTTC 567638 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||||||||| Sbjct 567637 CCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830019313824