Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq16 159 3e-34 >seq16 Length=823159 Score = 159 bits (176), Expect = 3e-34 Identities = 481/735 (65%), Gaps = 6/735 (1%) Strand=Plus/Plus Query 13927 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13986 ||| | |||||| || ||||| || || |||| || ||| || | |||||||| ||||| Sbjct 376807 AACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAA 376866 Query 13987 TGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAAT 14046 |||||| || | | ||| | || || ||| || | |||||| |||| Sbjct 376867 TGGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAAC 376926 Query 14047 GAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 14106 |||||||| ||||| |||| | ||| ||||| || || || ||| || | Sbjct 376927 AAACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGA 376986 Query 14107 ATTGGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCGTTTATAATAATCGTAATAATTT 14165 | || || || | || ||| || |||| ||||||| | ||| | | | | Sbjct 376987 CTCTGTCAAGAACTTTTGTTCAAT-GACAACAGCCTCAAGCACAATGCCCCTGACCTTGG 377045 Query 14166 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 14225 | | |||||| | | ||||| | || | | ||| ||||| || || | | Sbjct 377046 CCTCAGAAGGCTTGTTGCTGAGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 | ||||| | | |||||| || || || ||||| | ||||||||||| |||| |||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || ||||| || || ||||| |||||||| || ||||||||| | ||||||| Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || || || ||||| | ||| | | || ||||| || ||||| | | Sbjct 377226 CCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTTTG 377285 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465 |||| | ||| | || | ||||| || ||||| | || | ||||||| Sbjct 377286 CCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTCTGCCT 377345 Query 14466 TA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524 | |||| ||||||||| || | || | |||||||| ||| ||||| || || Sbjct 377346 CATCTTG-AATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAATC 377404 Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCT 14583 || || || ||||| |||||||| || |||| |||||||| | |||| | Sbjct 377405 ATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTTG 377464 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14643 || ||| |||||||| || || ||||| || ||||| ||||| | ||||| || Sbjct 377465 CTC-ACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTT 377523 Query 14644 AATAAAGTATTGCTC 14658 |||||||| |||| Sbjct 377524 GATAAAGTAACGCTC 377538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345165888960