Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 212 6e-50 >seq7 Length=1083452 Score = 212 bits (234), Expect = 6e-50 Identities = 572/864 (66%), Gaps = 32/864 (4%) Strand=Plus/Minus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 |||| ||||| || ||||||||||| || ||||||||||| ||||| || ||||| | || Sbjct 949191 CAAG-TTGCAAACCGCCACCTCGTCGTTTGACGTGTACTCGACAATCTCTGTACACAAAT 949133 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 || | ||| || || |||| || |||||| || | |||||||| ||| |||| Sbjct 949132 TGGAGCTCTTGATTGTACCCAGGTTCTGCTGGTTTGACTTGCCATTGCACGCATCTTTGT 949073 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 | ||||||||||| || || || || | |||||| || | ||||| ||||| || Sbjct 949072 ACAGCATGTACGGTGTTCCTGTTTCAATCTGCGAGTCCAGAATCGCGTACCACAGCTGCT 949013 Query 23211 GAGCGTGAACACGTCGCACGTACCTGCCT-TCT---TCCTCGTACTTTTGGTACAACGCG 23266 | || |||| | || | | || ||| ||| | |||||||||| |||||| || Sbjct 949012 GTGCTGGAAC-CTTCTTTCTTGCCAGCCCCTCTGTGTTCTCGTACTTTGTGTACAATGCC 948954 Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTC 23326 ||||| || | || || ||| || |||| | || || | | |||| Sbjct 948953 TCAAACTCCTCTCCCCAAACCTCGTGTAGATTTGGCGCCTCGTGTGGGCAGAACAAACTC 948894 Query 23327 CACATTGAGTC---ATTTTCAA---CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 || ||| ||| || | | || ||||||| | |||||| ||||| | | Sbjct 948893 CA------GTCCCTATTGTCCAGCACCCGCTTCATAAACAAATCCGGAATCCACATTCCA 948840 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 || |||| || || || | |||||| || ||| |||||| |||| |||||| Sbjct 948839 TAAAACAAGTCACGTGCCCTGTTCTCCTCCTTTCCGTGGTTCTTGCGCAAACTCAAAAAC 948780 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | |||||| ||||| ||||| ||||| | ||||| || || || |||||||| Sbjct 948779 TCAAAGATGTCCGCGTGCCATGGCTCCAGGTATATCGCAAATGCCCCTGGCCTCTTATTT 948720 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || || || || || || | || || | |||| | |||| ||||| ||||| | || Sbjct 948719 CCTCCTTGGTCCACATACCTTGCTGTATGGTTGAATACTCGGAGCATTGGCACTATCCCA 948660 Query 23561 TTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 || || | ||| | || || || | ||| || |||| | | ||| || || Sbjct 948659 TTCGATGTCCCG--TTCGTTCCTGCTATGTACGAGTCTGTTGCCCTGATGTTATGCACAC 948602 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | ||| || ||||| | || || ||||||||||| ||||| ||||| || ||||| | Sbjct 948601 TCAGACCAATTCCTCCTGCTGACTTTGATATCATCGCACATTGCTTCAGTGTATCGTAAA 948542 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 | || || || ||| || | ||| | ||| || ||||| |||| |||| Sbjct 948541 TCCCTTCAATAGAGTCATCCTGCATCGTCAGCAAAAAGCACGACGACAACTGCG---GAC 948485 Query 23739 GCGTAGCGGCCGAG---AACAGTGTCGGGCTGGCGTGCGTAA--AGTATCCATTCGACAT 23793 |||| | ||||| ||||| || || ||| ||||||| || || | |||||| Sbjct 948484 GCGTTGTACCCGAGTTAAACAGCGTTGGTGAGGCATGCGTAAACAGCTTC--TGCGACAT 948427 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 | || ||||| || || | | || || || || || || || || | | || | Sbjct 948426 CATGTTATACGTCTCAATAACCGACTCTATATCGTCCCCATGGATCCCAACGCTAACTCT 948367 Query 23854 CATCATCATGTATTGAGGTCTCTC 23877 ||| |||| ||| || || ||||| Sbjct 948366 CATAATCAAGTACTGTGGCCTCTC 948343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/433 (65%), Gaps = 5/433 (1%) Strand=Plus/Minus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| || || || ||||| || | ||||| | | | | ||||||||| || ||| | Sbjct 949822 GGTTGACTACCTGGAACTCACCTG-CAAGAACTCTTCTTGTGTAAATGTTTGAGGTGTAT 949764 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 || || || | || |||| ||||| ||||| | || || || || ||||| |||||| Sbjct 949763 GGCTCAAAGCACTCGTTGTACCCCAGAATCTGCGATGTTGACGCTGTAGGCATTGGCGCC 949704 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 | ||| ||||||||||| | || || |||| || || | | ||| | ||||||| Sbjct 949703 AGCAGCAGCGAGTTTCTGACTCCATGTTTTGCTATCTTTTGCCTCAGCTCTGCCCAGTCC 949644 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCC 22690 ||||| ||| ||| ||| | |||||| ||| || | || ||| Sbjct 949643 CACAGGTCGCTTGGC-TCAACT--CCCCACAGATCCATCTGTAGTTTTCCTTTGCTCATT 949587 Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 || ||||| ||||| || ||| || || | || || |||||||| | | || Sbjct 949586 GGACTGCCCTCGTATGTCGAGTAGGGTCCGTTCTTCATTGCCAGTTCGCACGACACTTCA 949527 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 | || ||| || | |||||||| || |||||| | || ||| | | Sbjct 949526 AGAGCTGCGTGGTACAGGGTCTCGAAAATCAGCTTGTTGAGCTCCTTGGCCCCCTCAGAC 949467 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 || |||||| | || ||||| |||||||| |||| || ||||| || || || || Sbjct 949466 TCAAACGGCAGCCTCAGCATCAAAAACGCGTCGGCCAGCCCTTGAACCCCCATCCCAATT 949407 Query 22871 GGTCGGTTTTTCA 22883 || |||| | ||| Sbjct 949406 GGCCGGTGTCTCA 949394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765998810240