Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16 174 2e-38 >seq16 Length=823159 Score = 174 bits (192), Expect = 2e-38 Identities = 574/880 (65%), Gaps = 13/880 (1%) Strand=Plus/Plus Query 33306 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33365 ||||||||||||||||| || || || |||| || ||| || | ||||| || ||||| Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 33366 GGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACG 33425 ||||| ||||| ||| ||||||| | | || |||||| || || Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 33426 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCC 33485 || || || ||| ||||| | ||| |||||||| || || ||||| | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 33486 ACAGT-AAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTC 33544 | || ||||| || |||||||||| || || | | ||| || || | | Sbjct 376988 TCTGTCAAGAACTT-TTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 33545 TTCACTCGG-TGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGAC 33603 ||| || | | || | ||| | || | || ||| || || || ||| | | Sbjct 377047 CTCAGAAGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 | || || | | ||| | || || || || || ||||| ||||| || || | ||||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | || || ||||| |||||||| || || || ||| | ||||| | Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCT----GTCATGTATCCACTTTTGAGCCCAATCG 33779 | | | ||| ||| | || || ||||| |||||||| | ||||| | Sbjct 377226 CCGCCAAACGCTCACCAAATGGTGC-CTCATCGTCATCAATCCACTTCAGGGCCCACTTT 377284 Query 33780 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 33839 ||||| | | | || || || | || || || ||||| || | ||| || || | Sbjct 377285 GCCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC-TGC 377343 Query 33840 CT-ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33898 || ||||| || || || || | || || |||||||| |||||||| ||||| Sbjct 377344 CTCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAAT 377403 Query 33899 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA-TC 33957 || || || || ||||||||||| ||||| | |||||| || || | | ||| | Sbjct 377404 CATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTT 377463 Query 33958 GTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTT 34017 | || | | |||||||| || |||||||| ||| ||||| || || | | | | Sbjct 377464 GCTCACC-AGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCT 377522 Query 34018 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 34077 | ||||| || |||| | || || || | ||| | | | || | || | || Sbjct 377523 TGATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGAT 377582 Query 34078 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 34137 |||| || || | |||| || || || || |||||||| ||||||||||| | |||| Sbjct 377583 CCACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCAT 377642 Query 34138 GATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 | || | ||||||||| | |||||||| |||| ||||| Sbjct 377643 GGTACTTGATTGGGAACAGCACAAATCTGCTTGGGTTTGG 377682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817033164160