Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq16 176 6e-39 >seq16 Length=823159 Score = 176 bits (194), Expect = 6e-39 Identities = 566/867 (65%), Gaps = 11/867 (1%) Strand=Plus/Plus Query 35882 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 35941 ||||||||||||||||| || || || |||| | ||| || | ||||| || || ||| Sbjct 376808 ACACGTTTTTCGAAAAAGTTGGTCTTGCCTTGCATTGAAATCATGTCCATAAAGTCAAAT 376867 Query 35942 GGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 36001 ||||| || || ||| ||||||| | | || |||||| || ||| Sbjct 376868 GGATTCTGCGAGTTGTAGTGTTTGGAGAATCCCAGAGCTATGAGCAGTCTATCGGCAACA 376927 Query 36002 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 36061 || || || ||| ||||| | ||| |||||||| || || ||||| | | | Sbjct 376928 AACTCAATGTATTGGCACATCAGTGCACTGTTCATTCCGATCAGCGATACTGGCAACGAC 376987 Query 36062 ACAGT-AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTC 36120 | || ||||| || ||||||||| || || || | ||| | || | | Sbjct 376988 TCTGTCAAGAACTT-TTGTTCAATGACAACAGCCTCAAGCACAATGCCCCTGACCTTGGC 377046 Query 36121 TTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 36179 ||| || | | | | | ||| | || | || ||| || || || ||||| | Sbjct 377047 CTCAGAAGGCTTGTTGCTG-AGATGGCTGAATAGCAGACAGGCAAAGTCTGTGTGTAACC 377105 Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 | || || | | ||| | || ||||| || || ||||| ||||| || || | ||||| Sbjct 377106 CTTCATCGCGGCAAATAAGCTCATTGGAGAATGTAAGTCCTGGCATCAGCCCTCTCTTTT 377165 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || | ||||| ||||| ||||||||||| || || ||| | ||||| | Sbjct 377166 TGAGCCAGAAAATTGCTGCAAACGATCCTGAAAAGAAAATACCCTCAACTACTGCAAACG 377225 Query 36300 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 | | | ||| ||| | | || ||||| |||||||| | ||||| | | Sbjct 377226 CCGCCAAACGCTCACCAAATGGTGCCTCATCGTCATCAATCCACTTCAGGGCCCACTTTG 377285 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 36416 |||| | | | || || || | || || || ||||| || | ||| || || | | Sbjct 377286 CCTTTTCTCCAATGCACGGAATGTTGTCAATTGCGTTAAACAGGTGGTTCTTCTC-TGCC 377344 Query 36417 T-ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 36475 | ||||| || ||||| || | || || |||||||| |||||||| ||||| Sbjct 377345 TCATCTTGAATGTATGTGTCCAGCAGCAGTGAGTACATTTCGCTGTGAATGTTCTCAATC 377404 Query 36476 GCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC-AAAATCG 36534 ||||| || || ||||||||||| ||||| | ||||||||| || | | ||| | | Sbjct 377405 ATGATTTGGAACCCATAGAAACATCTTGCCTCTGGAATCTGTACCTCATTGCTAAAGTTG 377464 Query 36535 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 36594 || | | |||||||| || ||||| || ||| ||||| || || | | | || Sbjct 377465 CTC-ACCAGGTTTTCATTGACAATTCCATCCGAGGCAGCAAAGAATGCTAGGATGTTCTT 377523 Query 36595 TATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 36654 ||||| || |||| | || || || | ||| | | | || | || | ||| Sbjct 377524 GATAAAGTAACGCTCGTGTTCTGAAAGCTTTTCCCAGTGTATTTTGTCATGTGAGAGATC 377583 Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| || || | |||| || || || || |||||||| ||||||||||| | ||||| Sbjct 377584 CACCTCCTCAGCGTTCCAGAAAGACGCTTCCGCCTTTTTGTACATATTCCACACCTCATG 377643 Query 36715 ATATTGAATTGGAAAAATAACAAATCT 36741 || | ||||| || | |||||||| Sbjct 377644 GTACTTGATTGGGAACAGCACAAATCT 377670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172207644480