Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capniomyces_20stellatus_20[genbank_20GCA_5F001661515.1_202016-06-10] 72 sequences; 24,845,880 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16 116 4e-21 seq56 86.0 6e-12 >seq16 Length=823159 Score = 116 bits (128), Expect = 4e-21 Identities = 343/523 (66%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 52534 AACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC 52593 ||||| ||||||| ||||||| | | |||||| | ||||| |||| ||||| Sbjct 377322 AACGCAATTGACAACATTCCGTGCATTGGAGAAAAGGCAAAGTGGGCCCTGAAGTGGATT 377263 Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653 || |||| | || | |||| || ||| ||| |||||||| |||| || ||| | Sbjct 377262 GATGACGATGAGGCACCATTTGGTGAGCGTTTGGCGGCGTTTGCAGTAGTTGAGGGTATT 377203 Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGC 52713 || ||||| || ||||| ||||| || | |||||| || | ||||| || Sbjct 377202 TTCTTTTCAGGATCGTTTGCAGCAATTTTCTGGCTCAAAAAGAGAGGGCTGATGCCAGGA 377143 Query 52714 CTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT 52773 || || || ||| ||| | || | ||||| ||||| | |||||||| ||||| ||| Sbjct 377142 CTTACATTCTCCAATGAGCTTATTTGCCGCGATGAAGGGTTACACACAGACTTTGCCTGT 377083 Query 52774 TTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAA--AAATTCTAGA-CATG 52830 || || | || | | || || | | | ||| || || | ||| Sbjct 377082 CTGC----TATTCAGCCATCTCAGCAACAA--GCCTTCTGAGGCCAAGGTCAGGGGCATT 377029 Query 52831 TTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTG 52890 | ||||| || | ||||||| || |||| || || || | || || ||||| || Sbjct 377028 GTGCTTGAGGCTGTTGTCATTGAACAAAAGTTCTTGACAGAGTCGTTGCCAGTATCGCTG 376969 Query 52891 TTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTG 52950 | || |||||| | |||||||| | ||||| ||||||||||| || |||||| | Sbjct 376968 ATCGGAATGAACAGTGCACTGATGTGCCAATACATTGAGTTTGTTGCCGATAGACTGCTC 376909 Query 52951 ATGCAGCTC--GGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008 || ||||| || | ||| |||| || ||| || || ||| |||||| ||| Sbjct 376908 AT--AGCTCTGGGATTCTCCAAACACTACAACTCGCAGAATCCATTTGACTTTATGGACA 376851 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGT 53051 || || | | ||||| || ||||||||||| | |||||| Sbjct 376850 TGATTTCAATGCAAGGCAAGACCAACTTTTTCGAAAAACGTGT 376808 >seq56 Length=671324 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || || || ||||| ||||| || ||| | Sbjct 567835 CCACCACGGAGACGGAGTACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 567776 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || || || ||||| ||| | |||| |||||||||||| || || Sbjct 567775 AAGGTACGGCCATCCTCAAGTTGCTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGA 567716 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| |||||||| | | || | || || | | |||||| Sbjct 567715 ATTCCTTCCTTATCCTGGATCTTTTGTTTAACGTTATCGATGGTATCTGAAGATTCCACC 567656 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | || ||||| || || ||||| Sbjct 567655 TCGAGGGTGATGGTCTTCCCAGTTAGTGTCTTTACAAAAATCTGCAT 567609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063553542400